Protein–RNA interactions for Protein: Q96MX0

CMTM3, CKLF-like MARVEL transmembrane domain-containing protein 3, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3Q96MX0 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
CMTM3Q96MX0 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC14.29□□□□□ -0.12
CMTM3Q96MX0 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CMTM3Q96MX0 AL845331.1-201ENST00000424978 1190 ntBASIC14.29□□□□□ -0.12
CMTM3Q96MX0 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CMTM3Q96MX0 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC14.29□□□□□ -0.12
CMTM3Q96MX0 COX5A-202ENST00000562233 441 ntTSL 3 BASIC14.29□□□□□ -0.12
CMTM3Q96MX0 COX5A-204ENST00000567270 579 ntTSL 3 BASIC14.29□□□□□ -0.12
CMTM3Q96MX0 AC090616.6-201ENST00000582640 721 ntBASIC14.29□□□□□ -0.12
CMTM3Q96MX0 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC14.29□□□□□ -0.12
CMTM3Q96MX0 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
CMTM3Q96MX0 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CMTM3Q96MX0 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC14.29□□□□□ -0.12
CMTM3Q96MX0 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC14.29□□□□□ -0.12
CMTM3Q96MX0 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CMTM3Q96MX0 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
CMTM3Q96MX0 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC14.29□□□□□ -0.12
CMTM3Q96MX0 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC14.29□□□□□ -0.12
CMTM3Q96MX0 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CMTM3Q96MX0 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
CMTM3Q96MX0 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC14.29□□□□□ -0.12
CMTM3Q96MX0 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC14.29□□□□□ -0.12
CMTM3Q96MX0 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CMTM3Q96MX0 LOX-206ENST00000639739 1626 ntTSL 5 BASIC14.29□□□□□ -0.12
CMTM3Q96MX0 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CMTM3Q96MX0 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
CMTM3Q96MX0 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CMTM3Q96MX0 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CMTM3Q96MX0 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC14.29□□□□□ -0.12
CMTM3Q96MX0 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CMTM3Q96MX0 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC14.29□□□□□ -0.12
CMTM3Q96MX0 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CMTM3Q96MX0 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CMTM3Q96MX0 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC14.29□□□□□ -0.12
CMTM3Q96MX0 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CMTM3Q96MX0 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
CMTM3Q96MX0 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CMTM3Q96MX0 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CMTM3Q96MX0 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CMTM3Q96MX0 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CMTM3Q96MX0 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CMTM3Q96MX0 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CMTM3Q96MX0 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CMTM3Q96MX0 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CMTM3Q96MX0 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC14.28□□□□□ -0.12
CMTM3Q96MX0 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CMTM3Q96MX0 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
CMTM3Q96MX0 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC14.28□□□□□ -0.12
CMTM3Q96MX0 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC14.28□□□□□ -0.12
CMTM3Q96MX0 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CMTM3Q96MX0 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC14.28□□□□□ -0.12
CMTM3Q96MX0 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CMTM3Q96MX0 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CMTM3Q96MX0 LINC00982-205ENST00000420957 435 ntBASIC14.28□□□□□ -0.12
CMTM3Q96MX0 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
CMTM3Q96MX0 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CMTM3Q96MX0 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CMTM3Q96MX0 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
CMTM3Q96MX0 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC14.28□□□□□ -0.12
CMTM3Q96MX0 MDH2-205ENST00000461263 648 ntTSL 2 BASIC14.28□□□□□ -0.12
CMTM3Q96MX0 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC14.28□□□□□ -0.12
CMTM3Q96MX0 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC14.28□□□□□ -0.12
CMTM3Q96MX0 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
CMTM3Q96MX0 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC14.28□□□□□ -0.12
CMTM3Q96MX0 MPDU1-223ENST00000582151 728 ntBASIC14.28□□□□□ -0.12
CMTM3Q96MX0 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CMTM3Q96MX0 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC14.28□□□□□ -0.12
CMTM3Q96MX0 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC14.28□□□□□ -0.12
CMTM3Q96MX0 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC14.28□□□□□ -0.12
CMTM3Q96MX0 AC011558.1-201ENST00000623459 338 ntBASIC14.28□□□□□ -0.12
CMTM3Q96MX0 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC14.28□□□□□ -0.12
CMTM3Q96MX0 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CMTM3Q96MX0 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
CMTM3Q96MX0 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CMTM3Q96MX0 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
CMTM3Q96MX0 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CMTM3Q96MX0 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CMTM3Q96MX0 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
CMTM3Q96MX0 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC14.27□□□□□ -0.12
CMTM3Q96MX0 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
CMTM3Q96MX0 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC14.27□□□□□ -0.12
CMTM3Q96MX0 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CMTM3Q96MX0 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
CMTM3Q96MX0 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC14.27□□□□□ -0.12
CMTM3Q96MX0 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
CMTM3Q96MX0 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CMTM3Q96MX0 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
CMTM3Q96MX0 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CMTM3Q96MX0 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CMTM3Q96MX0 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CMTM3Q96MX0 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
CMTM3Q96MX0 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
CMTM3Q96MX0 PID1-202ENST00000392054 2745 ntTSL 2 BASIC14.27□□□□□ -0.12
CMTM3Q96MX0 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
CMTM3Q96MX0 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC14.27□□□□□ -0.12
CMTM3Q96MX0 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CMTM3Q96MX0 AC026396.1-201ENST00000419388 421 ntBASIC14.27□□□□□ -0.13
CMTM3Q96MX0 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC14.27□□□□□ -0.13
CMTM3Q96MX0 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC14.27□□□□□ -0.13
CMTM3Q96MX0 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC14.27□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms