Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC14.51□□□□□ -0.09
CCDC54Q8NEL0 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC14.51□□□□□ -0.09
CCDC54Q8NEL0 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC54Q8NEL0 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
CCDC54Q8NEL0 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC14.51□□□□□ -0.09
CCDC54Q8NEL0 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC14.51□□□□□ -0.09
CCDC54Q8NEL0 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
CCDC54Q8NEL0 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
CCDC54Q8NEL0 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC54Q8NEL0 AC092171.3-201ENST00000610122 2651 ntBASIC14.5□□□□□ -0.09
CCDC54Q8NEL0 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC54Q8NEL0 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC54Q8NEL0 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC54Q8NEL0 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC14.5□□□□□ -0.09
CCDC54Q8NEL0 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC54Q8NEL0 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC14.5□□□□□ -0.09
CCDC54Q8NEL0 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC54Q8NEL0 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC54Q8NEL0 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC54Q8NEL0 PI4KAP1-204ENST00000612579 1703 ntBASIC14.5□□□□□ -0.09
CCDC54Q8NEL0 AC131009.4-201ENST00000624048 1740 ntBASIC14.5□□□□□ -0.09
CCDC54Q8NEL0 LINC01144-201ENST00000626198 1710 ntBASIC14.5□□□□□ -0.09
CCDC54Q8NEL0 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC54Q8NEL0 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC54Q8NEL0 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC54Q8NEL0 AC129492.6-201ENST00000611383 1305 ntBASIC14.5□□□□□ -0.09
CCDC54Q8NEL0 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
CCDC54Q8NEL0 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC14.5□□□□□ -0.09
CCDC54Q8NEL0 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC54Q8NEL0 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC14.5□□□□□ -0.09
CCDC54Q8NEL0 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC54Q8NEL0 TSPY19P-201ENST00000418461 509 ntBASIC14.5□□□□□ -0.09
CCDC54Q8NEL0 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC14.5□□□□□ -0.09
CCDC54Q8NEL0 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC14.5□□□□□ -0.09
CCDC54Q8NEL0 TSPY18P-201ENST00000441642 509 ntBASIC14.5□□□□□ -0.09
CCDC54Q8NEL0 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC14.5□□□□□ -0.09
CCDC54Q8NEL0 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC14.5□□□□□ -0.09
CCDC54Q8NEL0 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC54Q8NEL0 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC54Q8NEL0 AC091304.2-201ENST00000564639 760 ntBASIC14.5□□□□□ -0.09
CCDC54Q8NEL0 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC14.5□□□□□ -0.09
CCDC54Q8NEL0 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC14.5□□□□□ -0.09
CCDC54Q8NEL0 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC14.5□□□□□ -0.09
CCDC54Q8NEL0 AL732292.2-201ENST00000609649 430 ntBASIC14.5□□□□□ -0.09
CCDC54Q8NEL0 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC54Q8NEL0 BSG-214ENST00000614867 960 ntTSL 3 BASIC14.5□□□□□ -0.09
CCDC54Q8NEL0 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC54Q8NEL0 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC14.5□□□□□ -0.09
CCDC54Q8NEL0 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC54Q8NEL0 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC54Q8NEL0 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC14.5□□□□□ -0.09
CCDC54Q8NEL0 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC14.5□□□□□ -0.09
CCDC54Q8NEL0 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
CCDC54Q8NEL0 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC14.5□□□□□ -0.09
CCDC54Q8NEL0 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC14.5□□□□□ -0.09
CCDC54Q8NEL0 UBALD1-205ENST00000590891 2641 ntBASIC14.5□□□□□ -0.09
CCDC54Q8NEL0 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC54Q8NEL0 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC54Q8NEL0 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC54Q8NEL0 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
CCDC54Q8NEL0 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC54Q8NEL0 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC54Q8NEL0 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC14.5□□□□□ -0.09
CCDC54Q8NEL0 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC14.5□□□□□ -0.09
CCDC54Q8NEL0 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC14.5□□□□□ -0.09
CCDC54Q8NEL0 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
CCDC54Q8NEL0 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC54Q8NEL0 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC54Q8NEL0 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC14.49□□□□□ -0.09
CCDC54Q8NEL0 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC14.49□□□□□ -0.09
CCDC54Q8NEL0 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC14.49□□□□□ -0.09
CCDC54Q8NEL0 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC14.49□□□□□ -0.09
CCDC54Q8NEL0 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC54Q8NEL0 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC54Q8NEL0 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC54Q8NEL0 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC14.49□□□□□ -0.09
CCDC54Q8NEL0 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC54Q8NEL0 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC54Q8NEL0 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC54Q8NEL0 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
CCDC54Q8NEL0 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC54Q8NEL0 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC14.49□□□□□ -0.09
CCDC54Q8NEL0 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC14.49□□□□□ -0.09
CCDC54Q8NEL0 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC54Q8NEL0 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC54Q8NEL0 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC14.49□□□□□ -0.09
CCDC54Q8NEL0 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC54Q8NEL0 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC54Q8NEL0 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC14.49□□□□□ -0.09
CCDC54Q8NEL0 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC14.49□□□□□ -0.09
CCDC54Q8NEL0 PTCHD3P3-201ENST00000403073 906 ntBASIC14.49□□□□□ -0.09
CCDC54Q8NEL0 STARD13-205ENST00000439831 945 ntTSL 2 BASIC14.49□□□□□ -0.09
CCDC54Q8NEL0 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC54Q8NEL0 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC14.49□□□□□ -0.09
CCDC54Q8NEL0 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC14.49□□□□□ -0.09
CCDC54Q8NEL0 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC14.49□□□□□ -0.09
CCDC54Q8NEL0 NT5C-211ENST00000582170 653 ntTSL 3 BASIC14.49□□□□□ -0.09
CCDC54Q8NEL0 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC14.49□□□□□ -0.09
CCDC54Q8NEL0 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
CCDC54Q8NEL0 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms