Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC19.51■□□□□ 0.71
SYNE3Q6ZMZ3 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC19.51■□□□□ 0.71
SYNE3Q6ZMZ3 MIR3909-201ENST00000579518 119 ntBASIC19.51■□□□□ 0.71
SYNE3Q6ZMZ3 RPS15-207ENST00000591032 550 ntTSL 3 BASIC19.51■□□□□ 0.71
SYNE3Q6ZMZ3 RPS15-212ENST00000593052 629 ntTSL 2 BASIC19.51■□□□□ 0.71
SYNE3Q6ZMZ3 AL513190.1-201ENST00000621254 727 ntBASIC19.51■□□□□ 0.71
SYNE3Q6ZMZ3 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
SYNE3Q6ZMZ3 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SYNE3Q6ZMZ3 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC19.51■□□□□ 0.71
SYNE3Q6ZMZ3 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SYNE3Q6ZMZ3 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC19.51■□□□□ 0.71
SYNE3Q6ZMZ3 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC19.51■□□□□ 0.71
SYNE3Q6ZMZ3 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC19.51■□□□□ 0.71
SYNE3Q6ZMZ3 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC19.51■□□□□ 0.71
SYNE3Q6ZMZ3 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SYNE3Q6ZMZ3 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SYNE3Q6ZMZ3 PMS2P7-201ENST00000506558 1336 ntBASIC19.51■□□□□ 0.71
SYNE3Q6ZMZ3 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SYNE3Q6ZMZ3 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SYNE3Q6ZMZ3 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SYNE3Q6ZMZ3 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
SYNE3Q6ZMZ3 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
SYNE3Q6ZMZ3 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
SYNE3Q6ZMZ3 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SYNE3Q6ZMZ3 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC19.5■□□□□ 0.71
SYNE3Q6ZMZ3 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SYNE3Q6ZMZ3 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
SYNE3Q6ZMZ3 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC19.5■□□□□ 0.71
SYNE3Q6ZMZ3 CD99-202ENST00000381180 530 ntTSL 2 BASIC19.5■□□□□ 0.71
SYNE3Q6ZMZ3 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
SYNE3Q6ZMZ3 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC19.5■□□□□ 0.71
SYNE3Q6ZMZ3 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC19.5■□□□□ 0.71
SYNE3Q6ZMZ3 THTPA-204ENST00000554970 569 ntTSL 4 BASIC19.5■□□□□ 0.71
SYNE3Q6ZMZ3 THTPA-206ENST00000556015 535 ntTSL 3 BASIC19.5■□□□□ 0.71
SYNE3Q6ZMZ3 AC092865.6-201ENST00000642101 219 ntBASIC19.5■□□□□ 0.71
SYNE3Q6ZMZ3 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC19.5■□□□□ 0.71
SYNE3Q6ZMZ3 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SYNE3Q6ZMZ3 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SYNE3Q6ZMZ3 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SYNE3Q6ZMZ3 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
SYNE3Q6ZMZ3 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SYNE3Q6ZMZ3 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC19.5■□□□□ 0.71
SYNE3Q6ZMZ3 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SYNE3Q6ZMZ3 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SYNE3Q6ZMZ3 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC19.5■□□□□ 0.71
SYNE3Q6ZMZ3 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
SYNE3Q6ZMZ3 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SYNE3Q6ZMZ3 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC19.5■□□□□ 0.71
SYNE3Q6ZMZ3 AL031731.1-201ENST00000642131 2094 ntBASIC19.5■□□□□ 0.71
SYNE3Q6ZMZ3 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
SYNE3Q6ZMZ3 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
SYNE3Q6ZMZ3 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SYNE3Q6ZMZ3 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SYNE3Q6ZMZ3 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SYNE3Q6ZMZ3 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
SYNE3Q6ZMZ3 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SYNE3Q6ZMZ3 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
SYNE3Q6ZMZ3 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
SYNE3Q6ZMZ3 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC19.49■□□□□ 0.71
SYNE3Q6ZMZ3 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
SYNE3Q6ZMZ3 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC19.49■□□□□ 0.71
SYNE3Q6ZMZ3 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
SYNE3Q6ZMZ3 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SYNE3Q6ZMZ3 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC19.49■□□□□ 0.71
SYNE3Q6ZMZ3 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SYNE3Q6ZMZ3 AC023274.1-201ENST00000418278 595 ntBASIC19.49■□□□□ 0.71
SYNE3Q6ZMZ3 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC19.49■□□□□ 0.71
SYNE3Q6ZMZ3 AC140658.5-201ENST00000438532 169 ntBASIC19.49■□□□□ 0.71
SYNE3Q6ZMZ3 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC19.49■□□□□ 0.71
SYNE3Q6ZMZ3 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SYNE3Q6ZMZ3 NMU-202ENST00000505262 693 ntTSL 3 BASIC19.49■□□□□ 0.71
SYNE3Q6ZMZ3 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC19.49■□□□□ 0.71
SYNE3Q6ZMZ3 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
SYNE3Q6ZMZ3 AC068137.2-201ENST00000605408 478 ntBASIC19.49■□□□□ 0.71
SYNE3Q6ZMZ3 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SYNE3Q6ZMZ3 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SYNE3Q6ZMZ3 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
SYNE3Q6ZMZ3 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
SYNE3Q6ZMZ3 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SYNE3Q6ZMZ3 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SYNE3Q6ZMZ3 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SYNE3Q6ZMZ3 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
SYNE3Q6ZMZ3 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SYNE3Q6ZMZ3 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
SYNE3Q6ZMZ3 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
SYNE3Q6ZMZ3 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
SYNE3Q6ZMZ3 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC19.49■□□□□ 0.71
SYNE3Q6ZMZ3 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
SYNE3Q6ZMZ3 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC19.48■□□□□ 0.71
SYNE3Q6ZMZ3 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SYNE3Q6ZMZ3 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC19.48■□□□□ 0.71
SYNE3Q6ZMZ3 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SYNE3Q6ZMZ3 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC19.48■□□□□ 0.71
SYNE3Q6ZMZ3 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
SYNE3Q6ZMZ3 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SYNE3Q6ZMZ3 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC19.48■□□□□ 0.71
SYNE3Q6ZMZ3 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SYNE3Q6ZMZ3 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SYNE3Q6ZMZ3 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC19.48■□□□□ 0.71
SYNE3Q6ZMZ3 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC19.48■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 69.7 ms