Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC17.87■□□□□ 0.45
KRT39Q6A163 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC17.86■□□□□ 0.45
KRT39Q6A163 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC17.86■□□□□ 0.45
KRT39Q6A163 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC17.86■□□□□ 0.45
KRT39Q6A163 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC17.86■□□□□ 0.45
KRT39Q6A163 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
KRT39Q6A163 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
KRT39Q6A163 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC17.86■□□□□ 0.45
KRT39Q6A163 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
KRT39Q6A163 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
KRT39Q6A163 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
KRT39Q6A163 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
KRT39Q6A163 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC17.86■□□□□ 0.45
KRT39Q6A163 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
KRT39Q6A163 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
KRT39Q6A163 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC17.86■□□□□ 0.45
KRT39Q6A163 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
KRT39Q6A163 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC17.86■□□□□ 0.45
KRT39Q6A163 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC17.86■□□□□ 0.45
KRT39Q6A163 KRT18P34-201ENST00000488218 1270 ntBASIC17.86■□□□□ 0.45
KRT39Q6A163 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC17.86■□□□□ 0.45
KRT39Q6A163 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
KRT39Q6A163 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC17.86■□□□□ 0.45
KRT39Q6A163 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC17.86■□□□□ 0.45
KRT39Q6A163 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC17.86■□□□□ 0.45
KRT39Q6A163 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
KRT39Q6A163 PMS2P7-201ENST00000506558 1336 ntBASIC17.86■□□□□ 0.45
KRT39Q6A163 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC17.86■□□□□ 0.45
KRT39Q6A163 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
KRT39Q6A163 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC17.86■□□□□ 0.45
KRT39Q6A163 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
KRT39Q6A163 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC17.86■□□□□ 0.45
KRT39Q6A163 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
KRT39Q6A163 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC17.86■□□□□ 0.45
KRT39Q6A163 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC17.86■□□□□ 0.45
KRT39Q6A163 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
KRT39Q6A163 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC17.86■□□□□ 0.45
KRT39Q6A163 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC17.86■□□□□ 0.45
KRT39Q6A163 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC17.86■□□□□ 0.45
KRT39Q6A163 AC016027.1-202ENST00000607927 1699 ntBASIC17.86■□□□□ 0.45
KRT39Q6A163 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC17.86■□□□□ 0.45
KRT39Q6A163 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
KRT39Q6A163 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
KRT39Q6A163 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
KRT39Q6A163 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
KRT39Q6A163 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
KRT39Q6A163 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
KRT39Q6A163 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
KRT39Q6A163 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
KRT39Q6A163 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC17.85■□□□□ 0.45
KRT39Q6A163 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
KRT39Q6A163 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
KRT39Q6A163 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC17.85■□□□□ 0.45
KRT39Q6A163 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
KRT39Q6A163 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
KRT39Q6A163 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
KRT39Q6A163 WASH6P-202ENST00000359512 1437 ntBASIC17.85■□□□□ 0.45
KRT39Q6A163 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
KRT39Q6A163 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
KRT39Q6A163 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC17.85■□□□□ 0.45
KRT39Q6A163 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC17.85■□□□□ 0.45
KRT39Q6A163 FABP5-202ENST00000396359 986 ntTSL 5 BASIC17.85■□□□□ 0.45
KRT39Q6A163 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
KRT39Q6A163 MCCD1P2-201ENST00000423228 335 ntBASIC17.85■□□□□ 0.45
KRT39Q6A163 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC17.85■□□□□ 0.45
KRT39Q6A163 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
KRT39Q6A163 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
KRT39Q6A163 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC17.85■□□□□ 0.45
KRT39Q6A163 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
KRT39Q6A163 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC17.85■□□□□ 0.45
KRT39Q6A163 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
KRT39Q6A163 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
KRT39Q6A163 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
KRT39Q6A163 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC17.85■□□□□ 0.45
KRT39Q6A163 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC17.85■□□□□ 0.45
KRT39Q6A163 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC17.85■□□□□ 0.45
KRT39Q6A163 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC17.85■□□□□ 0.45
KRT39Q6A163 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
KRT39Q6A163 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
KRT39Q6A163 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC17.85■□□□□ 0.45
KRT39Q6A163 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
KRT39Q6A163 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
KRT39Q6A163 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
KRT39Q6A163 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
KRT39Q6A163 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
KRT39Q6A163 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
KRT39Q6A163 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
KRT39Q6A163 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
KRT39Q6A163 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
KRT39Q6A163 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC17.84■□□□□ 0.45
KRT39Q6A163 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
KRT39Q6A163 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
KRT39Q6A163 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
KRT39Q6A163 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC17.84■□□□□ 0.45
KRT39Q6A163 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
KRT39Q6A163 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
KRT39Q6A163 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC17.84■□□□□ 0.45
KRT39Q6A163 MTHFR-217ENST00000641820 1569 ntBASIC17.84■□□□□ 0.45
KRT39Q6A163 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC17.84■□□□□ 0.45
KRT39Q6A163 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC17.84■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 80 ms