Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AC006435.4-201ENST00000625037 234 ntBASIC17.22■□□□□ 0.35
CHD9Q3L8U1 AL356737.1-201ENST00000634391 234 ntBASIC17.22■□□□□ 0.35
CHD9Q3L8U1 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CHD9Q3L8U1 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CHD9Q3L8U1 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC17.22■□□□□ 0.35
CHD9Q3L8U1 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CHD9Q3L8U1 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CHD9Q3L8U1 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CHD9Q3L8U1 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CHD9Q3L8U1 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CHD9Q3L8U1 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
CHD9Q3L8U1 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CHD9Q3L8U1 RPS2P36-201ENST00000456516 831 ntBASIC17.22■□□□□ 0.35
CHD9Q3L8U1 FTH1P14-201ENST00000482930 551 ntBASIC17.22■□□□□ 0.35
CHD9Q3L8U1 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC17.22■□□□□ 0.35
CHD9Q3L8U1 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC17.22■□□□□ 0.35
CHD9Q3L8U1 AC036164.1-201ENST00000570544 333 ntBASIC17.22■□□□□ 0.35
CHD9Q3L8U1 AL118558.3-201ENST00000607414 1079 ntBASIC17.22■□□□□ 0.35
CHD9Q3L8U1 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CHD9Q3L8U1 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
CHD9Q3L8U1 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CHD9Q3L8U1 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC17.22■□□□□ 0.35
CHD9Q3L8U1 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CHD9Q3L8U1 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CHD9Q3L8U1 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
CHD9Q3L8U1 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC17.21■□□□□ 0.35
CHD9Q3L8U1 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
CHD9Q3L8U1 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
CHD9Q3L8U1 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CHD9Q3L8U1 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CHD9Q3L8U1 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CHD9Q3L8U1 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CHD9Q3L8U1 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CHD9Q3L8U1 MGST3-203ENST00000367885 680 ntTSL 2 BASIC17.21■□□□□ 0.35
CHD9Q3L8U1 DPM2-202ENST00000373110 738 ntTSL 2 BASIC17.21■□□□□ 0.35
CHD9Q3L8U1 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CHD9Q3L8U1 YBX1P6-201ENST00000442962 1002 ntBASIC17.21■□□□□ 0.35
CHD9Q3L8U1 ENPP7P5-201ENST00000541031 1031 ntBASIC17.21■□□□□ 0.35
CHD9Q3L8U1 LINC01115-203ENST00000606068 577 ntBASIC17.21■□□□□ 0.35
CHD9Q3L8U1 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CHD9Q3L8U1 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CHD9Q3L8U1 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC17.21■□□□□ 0.35
CHD9Q3L8U1 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
CHD9Q3L8U1 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
CHD9Q3L8U1 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
CHD9Q3L8U1 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
CHD9Q3L8U1 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC17.21■□□□□ 0.35
CHD9Q3L8U1 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC17.21■□□□□ 0.35
CHD9Q3L8U1 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC17.21■□□□□ 0.35
CHD9Q3L8U1 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC17.21■□□□□ 0.34
CHD9Q3L8U1 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC17.21■□□□□ 0.34
CHD9Q3L8U1 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC17.21■□□□□ 0.34
CHD9Q3L8U1 USE1-206ENST00000595101 1776 ntTSL 2 BASIC17.21■□□□□ 0.34
CHD9Q3L8U1 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC17.21■□□□□ 0.34
CHD9Q3L8U1 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CHD9Q3L8U1 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CHD9Q3L8U1 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
CHD9Q3L8U1 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC17.2■□□□□ 0.34
CHD9Q3L8U1 AL645728.1-201ENST00000366221 2101 ntBASIC17.2■□□□□ 0.34
CHD9Q3L8U1 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC17.2■□□□□ 0.34
CHD9Q3L8U1 AC079328.1-201ENST00000560358 952 ntBASIC17.2■□□□□ 0.34
CHD9Q3L8U1 AL365330.1-201ENST00000607459 531 ntBASIC17.2■□□□□ 0.34
CHD9Q3L8U1 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC17.2■□□□□ 0.34
CHD9Q3L8U1 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC17.2■□□□□ 0.34
CHD9Q3L8U1 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CHD9Q3L8U1 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CHD9Q3L8U1 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CHD9Q3L8U1 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CHD9Q3L8U1 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
CHD9Q3L8U1 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC17.2■□□□□ 0.34
CHD9Q3L8U1 BTBD6P1-201ENST00000412176 1267 ntBASIC17.2■□□□□ 0.34
CHD9Q3L8U1 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC17.2■□□□□ 0.34
CHD9Q3L8U1 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC17.2■□□□□ 0.34
CHD9Q3L8U1 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CHD9Q3L8U1 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC17.2■□□□□ 0.34
CHD9Q3L8U1 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CHD9Q3L8U1 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC17.2■□□□□ 0.34
CHD9Q3L8U1 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CHD9Q3L8U1 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CHD9Q3L8U1 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
CHD9Q3L8U1 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
CHD9Q3L8U1 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CHD9Q3L8U1 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC17.2■□□□□ 0.34
CHD9Q3L8U1 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CHD9Q3L8U1 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC17.19■□□□□ 0.34
CHD9Q3L8U1 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC17.19■□□□□ 0.34
CHD9Q3L8U1 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
CHD9Q3L8U1 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CHD9Q3L8U1 ZBTB12BP-201ENST00000314232 1122 ntBASIC17.19■□□□□ 0.34
CHD9Q3L8U1 CNN2P8-201ENST00000421872 913 ntBASIC17.19■□□□□ 0.34
CHD9Q3L8U1 AC068587.3-201ENST00000526613 355 ntBASIC17.19■□□□□ 0.34
CHD9Q3L8U1 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CHD9Q3L8U1 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CHD9Q3L8U1 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CHD9Q3L8U1 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CHD9Q3L8U1 GGCT-203ENST00000409144 836 ntTSL 2 BASIC17.19■□□□□ 0.34
CHD9Q3L8U1 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
CHD9Q3L8U1 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC17.19■□□□□ 0.34
CHD9Q3L8U1 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
CHD9Q3L8U1 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms