Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC10.03□□□□□ -0.8
HSPG2P98160 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC10.03□□□□□ -0.8
HSPG2P98160 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
HSPG2P98160 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC10.03□□□□□ -0.8
HSPG2P98160 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
HSPG2P98160 AC074338.1-201ENST00000416825 156 ntBASIC10.03□□□□□ -0.8
HSPG2P98160 CRTC3-AS1-202ENST00000559531 657 ntTSL 3 BASIC10.03□□□□□ -0.8
HSPG2P98160 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
HSPG2P98160 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC10.03□□□□□ -0.8
HSPG2P98160 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC10.03□□□□□ -0.8
HSPG2P98160 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC10.03□□□□□ -0.8
HSPG2P98160 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
HSPG2P98160 AC013467.2-201ENST00000605472 835 ntBASIC10.03□□□□□ -0.8
HSPG2P98160 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
HSPG2P98160 CASP16P-204ENST00000635032 809 ntBASIC10.03□□□□□ -0.8
HSPG2P98160 HLA-C-210ENST00000640219 976 ntBASIC10.03□□□□□ -0.8
HSPG2P98160 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.8
HSPG2P98160 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC10.02□□□□□ -0.8
HSPG2P98160 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.8
HSPG2P98160 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC10.02□□□□□ -0.8
HSPG2P98160 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC10.02□□□□□ -0.8
HSPG2P98160 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC10.02□□□□□ -0.8
HSPG2P98160 AC133963.1-201ENST00000504166 1679 ntBASIC10.02□□□□□ -0.81
HSPG2P98160 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
HSPG2P98160 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC10.02□□□□□ -0.81
HSPG2P98160 RNF41-210ENST00000552244 716 ntTSL 3 BASIC10.02□□□□□ -0.81
HSPG2P98160 AP001063.1-201ENST00000568332 529 ntBASIC10.02□□□□□ -0.81
HSPG2P98160 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
HSPG2P98160 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC10.02□□□□□ -0.81
HSPG2P98160 CDK7-214ENST00000626796 358 ntTSL 5 BASIC10.02□□□□□ -0.81
HSPG2P98160 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC10.02□□□□□ -0.81
HSPG2P98160 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC10.02□□□□□ -0.81
HSPG2P98160 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
HSPG2P98160 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC10.02□□□□□ -0.81
HSPG2P98160 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
HSPG2P98160 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC10.02□□□□□ -0.81
HSPG2P98160 AC093525.9-201ENST00000624961 1746 ntBASIC10.02□□□□□ -0.81
HSPG2P98160 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
HSPG2P98160 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC10.02□□□□□ -0.81
HSPG2P98160 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
HSPG2P98160 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
HSPG2P98160 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC10.02□□□□□ -0.81
HSPG2P98160 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
HSPG2P98160 AL021707.5-201ENST00000420118 461 ntTSL 5 BASIC10.02□□□□□ -0.81
HSPG2P98160 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
HSPG2P98160 POM121L10P-201ENST00000436994 1285 ntBASIC10.02□□□□□ -0.81
HSPG2P98160 AC245884.6-201ENST00000515672 1067 ntBASIC10.02□□□□□ -0.81
HSPG2P98160 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC10.02□□□□□ -0.81
HSPG2P98160 AC015818.8-201ENST00000587907 1519 ntBASIC10.02□□□□□ -0.81
HSPG2P98160 GGT4P-201ENST00000623672 1708 ntBASIC10.02□□□□□ -0.81
HSPG2P98160 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
HSPG2P98160 KRT8P39-201ENST00000396270 1433 ntBASIC10.02□□□□□ -0.81
HSPG2P98160 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
HSPG2P98160 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
HSPG2P98160 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
HSPG2P98160 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
HSPG2P98160 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC10.02□□□□□ -0.81
HSPG2P98160 AC004973.1-201ENST00000413240 635 ntTSL 3 BASIC10.02□□□□□ -0.81
HSPG2P98160 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC10.02□□□□□ -0.81
HSPG2P98160 AC044849.1-201ENST00000519737 1188 ntBASIC10.02□□□□□ -0.81
HSPG2P98160 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC10.02□□□□□ -0.81
HSPG2P98160 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC10.02□□□□□ -0.81
HSPG2P98160 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC10.02□□□□□ -0.81
HSPG2P98160 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC10.02□□□□□ -0.81
HSPG2P98160 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC10.02□□□□□ -0.81
HSPG2P98160 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC10.02□□□□□ -0.81
HSPG2P98160 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC10.02□□□□□ -0.81
HSPG2P98160 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
HSPG2P98160 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC10.01□□□□□ -0.81
HSPG2P98160 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
HSPG2P98160 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
HSPG2P98160 SYCN-201ENST00000318438 573 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
HSPG2P98160 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
HSPG2P98160 KAZN-204ENST00000400797 1295 ntTSL 1 (best) BASIC10.01□□□□□ -0.81
HSPG2P98160 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC10.01□□□□□ -0.81
HSPG2P98160 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC10.01□□□□□ -0.81
HSPG2P98160 AC025165.3-201ENST00000471530 679 ntTSL 5 BASIC10.01□□□□□ -0.81
HSPG2P98160 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC10.01□□□□□ -0.81
HSPG2P98160 IQSEC3P1-201ENST00000538799 536 ntBASIC10.01□□□□□ -0.81
HSPG2P98160 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC10.01□□□□□ -0.81
HSPG2P98160 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC10.01□□□□□ -0.81
HSPG2P98160 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC10.01□□□□□ -0.81
HSPG2P98160 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC10.01□□□□□ -0.81
HSPG2P98160 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC10.01□□□□□ -0.81
HSPG2P98160 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
HSPG2P98160 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC10.01□□□□□ -0.81
HSPG2P98160 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
HSPG2P98160 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC10.01□□□□□ -0.81
HSPG2P98160 LINC00470-210ENST00000584090 1334 ntTSL 1 (best) BASIC10.01□□□□□ -0.81
HSPG2P98160 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC10.01□□□□□ -0.81
HSPG2P98160 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC10.01□□□□□ -0.81
HSPG2P98160 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC10.01□□□□□ -0.81
HSPG2P98160 AC006277.1-201ENST00000624348 1610 ntBASIC10.01□□□□□ -0.81
HSPG2P98160 TCERG1L-AS1-201ENST00000436942 472 ntTSL 2 BASIC10.01□□□□□ -0.81
HSPG2P98160 VDAC1P7-201ENST00000462417 847 ntBASIC10.01□□□□□ -0.81
HSPG2P98160 AC141586.1-203ENST00000567242 366 ntBASIC10.01□□□□□ -0.81
HSPG2P98160 AC100778.2-201ENST00000580150 483 ntTSL 5 BASIC10.01□□□□□ -0.81
HSPG2P98160 TMEM205-216ENST00000593256 792 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
HSPG2P98160 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC10.01□□□□□ -0.81
HSPG2P98160 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC10.01□□□□□ -0.81
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms