Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC11.7□□□□□ -0.54
PRKDCP78527 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC11.7□□□□□ -0.54
PRKDCP78527 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
PRKDCP78527 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC11.7□□□□□ -0.54
PRKDCP78527 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC11.7□□□□□ -0.54
PRKDCP78527 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC11.7□□□□□ -0.54
PRKDCP78527 AC134312.5-201ENST00000568031 1313 ntBASIC11.7□□□□□ -0.54
PRKDCP78527 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
PRKDCP78527 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
PRKDCP78527 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC11.7□□□□□ -0.54
PRKDCP78527 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
PRKDCP78527 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
PRKDCP78527 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
PRKDCP78527 PSMG4-203ENST00000380306 726 ntTSL 3 BASIC11.7□□□□□ -0.54
PRKDCP78527 CHCHD2-201ENST00000395422 901 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
PRKDCP78527 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC11.7□□□□□ -0.54
PRKDCP78527 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
PRKDCP78527 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC11.7□□□□□ -0.54
PRKDCP78527 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
PRKDCP78527 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
PRKDCP78527 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
PRKDCP78527 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
PRKDCP78527 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
PRKDCP78527 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC11.7□□□□□ -0.54
PRKDCP78527 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
PRKDCP78527 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
PRKDCP78527 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
PRKDCP78527 RN7SL818P-201ENST00000485099 259 ntBASIC11.7□□□□□ -0.54
PRKDCP78527 EIF5AP2-201ENST00000585668 1047 ntBASIC11.7□□□□□ -0.54
PRKDCP78527 RN7SL725P-201ENST00000606439 259 ntBASIC11.7□□□□□ -0.54
PRKDCP78527 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC11.7□□□□□ -0.54
PRKDCP78527 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC11.7□□□□□ -0.54
PRKDCP78527 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
PRKDCP78527 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
PRKDCP78527 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
PRKDCP78527 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
PRKDCP78527 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
PRKDCP78527 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
PRKDCP78527 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC11.69□□□□□ -0.54
PRKDCP78527 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
PRKDCP78527 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC11.69□□□□□ -0.54
PRKDCP78527 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
PRKDCP78527 NDUFB11-202ENST00000377811 1388 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
PRKDCP78527 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
PRKDCP78527 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
PRKDCP78527 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
PRKDCP78527 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC11.69□□□□□ -0.54
PRKDCP78527 EEF1DP6-201ENST00000449232 372 ntBASIC11.69□□□□□ -0.54
PRKDCP78527 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC11.69□□□□□ -0.54
PRKDCP78527 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
PRKDCP78527 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC11.69□□□□□ -0.54
PRKDCP78527 WDR7-208ENST00000589935 544 ntTSL 4 BASIC11.69□□□□□ -0.54
PRKDCP78527 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC11.69□□□□□ -0.54
PRKDCP78527 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC11.69□□□□□ -0.54
PRKDCP78527 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC11.69□□□□□ -0.54
PRKDCP78527 AC104581.1-202ENST00000635932 2618 ntBASIC11.69□□□□□ -0.54
PRKDCP78527 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
PRKDCP78527 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
PRKDCP78527 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
PRKDCP78527 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
PRKDCP78527 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC11.69□□□□□ -0.54
PRKDCP78527 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC11.69□□□□□ -0.54
PRKDCP78527 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
PRKDCP78527 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
PRKDCP78527 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC11.69□□□□□ -0.54
PRKDCP78527 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC11.69□□□□□ -0.54
PRKDCP78527 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC11.69□□□□□ -0.54
PRKDCP78527 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC11.69□□□□□ -0.54
PRKDCP78527 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC11.69□□□□□ -0.54
PRKDCP78527 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC11.69□□□□□ -0.54
PRKDCP78527 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC11.69□□□□□ -0.54
PRKDCP78527 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC11.69□□□□□ -0.54
PRKDCP78527 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC11.69□□□□□ -0.54
PRKDCP78527 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC11.69□□□□□ -0.54
PRKDCP78527 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
PRKDCP78527 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC11.69□□□□□ -0.54
PRKDCP78527 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC11.69□□□□□ -0.54
PRKDCP78527 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC11.69□□□□□ -0.54
PRKDCP78527 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC11.69□□□□□ -0.54
PRKDCP78527 KRT8P49-201ENST00000604166 1432 ntBASIC11.69□□□□□ -0.54
PRKDCP78527 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC11.69□□□□□ -0.54
PRKDCP78527 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC11.69□□□□□ -0.54
PRKDCP78527 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC11.69□□□□□ -0.54
PRKDCP78527 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC11.69□□□□□ -0.54
PRKDCP78527 AC116609.2-201ENST00000431542 256 ntTSL 5 BASIC11.69□□□□□ -0.54
PRKDCP78527 AC091179.2-201ENST00000495536 532 ntTSL 3 BASIC11.69□□□□□ -0.54
PRKDCP78527 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
PRKDCP78527 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC11.69□□□□□ -0.54
PRKDCP78527 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC11.69□□□□□ -0.54
PRKDCP78527 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
PRKDCP78527 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC11.69□□□□□ -0.54
PRKDCP78527 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC11.69□□□□□ -0.54
PRKDCP78527 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
PRKDCP78527 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
PRKDCP78527 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC11.68□□□□□ -0.54
PRKDCP78527 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC11.68□□□□□ -0.54
PRKDCP78527 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
PRKDCP78527 C2orf27AP3-201ENST00000434123 579 ntBASIC11.68□□□□□ -0.54
PRKDCP78527 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC11.68□□□□□ -0.54
PRKDCP78527 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms