Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
EPHB3P54753 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
EPHB3P54753 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
EPHB3P54753 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
EPHB3P54753 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
EPHB3P54753 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
EPHB3P54753 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC17.21■□□□□ 0.35
EPHB3P54753 GOLGA6L11P-201ENST00000417252 1298 ntBASIC17.21■□□□□ 0.35
EPHB3P54753 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC17.21■□□□□ 0.35
EPHB3P54753 PNKD-204ENST00000436005 978 ntTSL 5 BASIC17.21■□□□□ 0.35
EPHB3P54753 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
EPHB3P54753 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
EPHB3P54753 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC17.21■□□□□ 0.35
EPHB3P54753 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC17.21■□□□□ 0.35
EPHB3P54753 SERBP1P5-201ENST00000510079 1181 ntBASIC17.21■□□□□ 0.35
EPHB3P54753 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC17.21■□□□□ 0.35
EPHB3P54753 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC17.21■□□□□ 0.35
EPHB3P54753 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC17.21■□□□□ 0.35
EPHB3P54753 PRR29-209ENST00000582540 967 ntTSL 2 BASIC17.21■□□□□ 0.35
EPHB3P54753 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC17.21■□□□□ 0.35
EPHB3P54753 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC17.21■□□□□ 0.35
EPHB3P54753 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.35
EPHB3P54753 TEX28P1-201ENST00000613479 1221 ntBASIC17.21■□□□□ 0.35
EPHB3P54753 TEX28P2-201ENST00000617764 1221 ntBASIC17.21■□□□□ 0.35
EPHB3P54753 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
EPHB3P54753 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
EPHB3P54753 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
EPHB3P54753 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC17.21■□□□□ 0.35
EPHB3P54753 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
EPHB3P54753 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC17.21■□□□□ 0.35
EPHB3P54753 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
EPHB3P54753 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
EPHB3P54753 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
EPHB3P54753 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC17.21■□□□□ 0.35
EPHB3P54753 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
EPHB3P54753 AL589702.1-201ENST00000641229 1509 ntBASIC17.21■□□□□ 0.34
EPHB3P54753 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.34
EPHB3P54753 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
EPHB3P54753 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
EPHB3P54753 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
EPHB3P54753 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
EPHB3P54753 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
EPHB3P54753 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
EPHB3P54753 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC17.2■□□□□ 0.34
EPHB3P54753 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
EPHB3P54753 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC17.2■□□□□ 0.34
EPHB3P54753 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
EPHB3P54753 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
EPHB3P54753 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
EPHB3P54753 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
EPHB3P54753 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC17.2■□□□□ 0.34
EPHB3P54753 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
EPHB3P54753 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
EPHB3P54753 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
EPHB3P54753 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC17.2■□□□□ 0.34
EPHB3P54753 HLA-J-202ENST00000469281 1241 ntBASIC17.2■□□□□ 0.34
EPHB3P54753 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC17.2■□□□□ 0.34
EPHB3P54753 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC17.2■□□□□ 0.34
EPHB3P54753 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC17.2■□□□□ 0.34
EPHB3P54753 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC17.2■□□□□ 0.34
EPHB3P54753 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC17.2■□□□□ 0.34
EPHB3P54753 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC17.2■□□□□ 0.34
EPHB3P54753 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC17.2■□□□□ 0.34
EPHB3P54753 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC17.2■□□□□ 0.34
EPHB3P54753 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC17.2■□□□□ 0.34
EPHB3P54753 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
EPHB3P54753 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
EPHB3P54753 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
EPHB3P54753 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
EPHB3P54753 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
EPHB3P54753 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
EPHB3P54753 CROCCP1-201ENST00000426910 5675 ntBASIC17.2■□□□□ 0.34
EPHB3P54753 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
EPHB3P54753 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
EPHB3P54753 AC087499.5-201ENST00000452760 1342 ntBASIC17.2■□□□□ 0.34
EPHB3P54753 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
EPHB3P54753 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
EPHB3P54753 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
EPHB3P54753 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
EPHB3P54753 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
EPHB3P54753 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
EPHB3P54753 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC17.19■□□□□ 0.34
EPHB3P54753 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC17.19■□□□□ 0.34
EPHB3P54753 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC17.19■□□□□ 0.34
EPHB3P54753 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
EPHB3P54753 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
EPHB3P54753 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
EPHB3P54753 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
EPHB3P54753 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
EPHB3P54753 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
EPHB3P54753 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
EPHB3P54753 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC17.19■□□□□ 0.34
EPHB3P54753 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC17.19■□□□□ 0.34
EPHB3P54753 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
EPHB3P54753 TDG-209ENST00000544861 1387 ntTSL 2 BASIC17.19■□□□□ 0.34
EPHB3P54753 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
EPHB3P54753 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
EPHB3P54753 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
EPHB3P54753 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
EPHB3P54753 EDF1-203ENST00000371649 790 ntTSL 2 BASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms