Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
NEK3P51956 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NEK3P51956 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
NEK3P51956 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
NEK3P51956 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
NEK3P51956 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
NEK3P51956 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NEK3P51956 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NEK3P51956 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
NEK3P51956 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
NEK3P51956 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC17.11■□□□□ 0.33
NEK3P51956 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC17.11■□□□□ 0.33
NEK3P51956 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NEK3P51956 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC17.11■□□□□ 0.33
NEK3P51956 C20orf181-201ENST00000623918 480 ntBASIC17.11■□□□□ 0.33
NEK3P51956 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC17.11■□□□□ 0.33
NEK3P51956 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NEK3P51956 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC17.11■□□□□ 0.33
NEK3P51956 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC17.11■□□□□ 0.33
NEK3P51956 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC17.11■□□□□ 0.33
NEK3P51956 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC17.11■□□□□ 0.33
NEK3P51956 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC17.11■□□□□ 0.33
NEK3P51956 AL645728.1-201ENST00000366221 2101 ntBASIC17.11■□□□□ 0.33
NEK3P51956 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC17.11■□□□□ 0.33
NEK3P51956 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
NEK3P51956 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC17.11■□□□□ 0.33
NEK3P51956 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
NEK3P51956 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC17.1■□□□□ 0.33
NEK3P51956 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC17.1■□□□□ 0.33
NEK3P51956 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
NEK3P51956 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
NEK3P51956 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
NEK3P51956 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NEK3P51956 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
NEK3P51956 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
NEK3P51956 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC17.1■□□□□ 0.33
NEK3P51956 AC004967.1-201ENST00000453589 447 ntBASIC17.1■□□□□ 0.33
NEK3P51956 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC17.1■□□□□ 0.33
NEK3P51956 AC074386.1-202ENST00000463561 864 ntBASIC17.1■□□□□ 0.33
NEK3P51956 ALG1L5P-201ENST00000482043 771 ntBASIC17.1■□□□□ 0.33
NEK3P51956 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC17.1■□□□□ 0.33
NEK3P51956 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC17.1■□□□□ 0.33
NEK3P51956 AC107918.2-201ENST00000530817 355 ntBASIC17.1■□□□□ 0.33
NEK3P51956 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
NEK3P51956 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC17.1■□□□□ 0.33
NEK3P51956 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NEK3P51956 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
NEK3P51956 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
NEK3P51956 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NEK3P51956 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
NEK3P51956 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC17.1■□□□□ 0.33
NEK3P51956 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NEK3P51956 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
NEK3P51956 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
NEK3P51956 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC17.1■□□□□ 0.33
NEK3P51956 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
NEK3P51956 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
NEK3P51956 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
NEK3P51956 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
NEK3P51956 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
NEK3P51956 CROCCP1-201ENST00000426910 5675 ntBASIC17.09■□□□□ 0.33
NEK3P51956 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
NEK3P51956 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
NEK3P51956 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
NEK3P51956 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC17.09■□□□□ 0.33
NEK3P51956 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC17.09■□□□□ 0.33
NEK3P51956 MKNK2P1-201ENST00000437526 628 ntBASIC17.09■□□□□ 0.33
NEK3P51956 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC17.09■□□□□ 0.33
NEK3P51956 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC17.09■□□□□ 0.33
NEK3P51956 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
NEK3P51956 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC17.09■□□□□ 0.33
NEK3P51956 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC17.09■□□□□ 0.33
NEK3P51956 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC17.09■□□□□ 0.33
NEK3P51956 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC17.09■□□□□ 0.33
NEK3P51956 AL078644.1-201ENST00000609881 752 ntBASIC17.09■□□□□ 0.33
NEK3P51956 MED16-214ENST00000617672 554 ntTSL 5 BASIC17.09■□□□□ 0.33
NEK3P51956 AC079781.4-201ENST00000641908 219 ntBASIC17.09■□□□□ 0.33
NEK3P51956 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
NEK3P51956 AL391256.1-201ENST00000443260 1855 ntBASIC17.09■□□□□ 0.33
NEK3P51956 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC17.09■□□□□ 0.33
NEK3P51956 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
NEK3P51956 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC17.09■□□□□ 0.33
NEK3P51956 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
NEK3P51956 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
NEK3P51956 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
NEK3P51956 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC17.09■□□□□ 0.33
NEK3P51956 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
NEK3P51956 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
NEK3P51956 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC17.08■□□□□ 0.33
NEK3P51956 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
NEK3P51956 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
NEK3P51956 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.33
NEK3P51956 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
NEK3P51956 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
NEK3P51956 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
NEK3P51956 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
NEK3P51956 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
NEK3P51956 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
NEK3P51956 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
NEK3P51956 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC17.08■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms