Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
CTCFP49711 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC19.07■□□□□ 0.64
CTCFP49711 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC19.06■□□□□ 0.64
CTCFP49711 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
CTCFP49711 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CTCFP49711 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC19.06■□□□□ 0.64
CTCFP49711 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC19.06■□□□□ 0.64
CTCFP49711 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CTCFP49711 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CTCFP49711 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CTCFP49711 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CTCFP49711 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CTCFP49711 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC19.06■□□□□ 0.64
CTCFP49711 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CTCFP49711 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
CTCFP49711 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CTCFP49711 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC19.06■□□□□ 0.64
CTCFP49711 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CTCFP49711 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC19.06■□□□□ 0.64
CTCFP49711 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC19.06■□□□□ 0.64
CTCFP49711 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CTCFP49711 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
CTCFP49711 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC19.06■□□□□ 0.64
CTCFP49711 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CTCFP49711 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC19.06■□□□□ 0.64
CTCFP49711 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC19.06■□□□□ 0.64
CTCFP49711 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC19.06■□□□□ 0.64
CTCFP49711 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC19.06■□□□□ 0.64
CTCFP49711 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC19.06■□□□□ 0.64
CTCFP49711 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CTCFP49711 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC19.06■□□□□ 0.64
CTCFP49711 SUOX-214ENST00000551841 906 ntTSL 3 BASIC19.06■□□□□ 0.64
CTCFP49711 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC19.06■□□□□ 0.64
CTCFP49711 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CTCFP49711 AC009542.2-202ENST00000619004 1067 ntBASIC19.06■□□□□ 0.64
CTCFP49711 AP001350.2-201ENST00000625104 1094 ntBASIC19.06■□□□□ 0.64
CTCFP49711 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC19.06■□□□□ 0.64
CTCFP49711 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC19.06■□□□□ 0.64
CTCFP49711 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC19.06■□□□□ 0.64
CTCFP49711 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CTCFP49711 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC19.06■□□□□ 0.64
CTCFP49711 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CTCFP49711 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CTCFP49711 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CTCFP49711 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
CTCFP49711 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CTCFP49711 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CTCFP49711 HCG11-201ENST00000411553 5696 ntBASIC19.05■□□□□ 0.64
CTCFP49711 FLJ13224-201ENST00000313737 1514 ntBASIC19.05■□□□□ 0.64
CTCFP49711 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CTCFP49711 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CTCFP49711 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CTCFP49711 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CTCFP49711 AMT-250ENST00000637682 1823 ntTSL 5 BASIC19.05■□□□□ 0.64
CTCFP49711 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
CTCFP49711 BEX2-201ENST00000372674 668 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
CTCFP49711 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CTCFP49711 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CTCFP49711 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC19.05■□□□□ 0.64
CTCFP49711 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC19.05■□□□□ 0.64
CTCFP49711 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC19.05■□□□□ 0.64
CTCFP49711 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
CTCFP49711 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC19.05■□□□□ 0.64
CTCFP49711 EIF4HP1-201ENST00000453115 687 ntBASIC19.05■□□□□ 0.64
CTCFP49711 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC19.05■□□□□ 0.64
CTCFP49711 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC19.05■□□□□ 0.64
CTCFP49711 AP000812.2-201ENST00000538934 718 ntBASIC19.05■□□□□ 0.64
CTCFP49711 ACTG1P17-201ENST00000558391 1119 ntBASIC19.05■□□□□ 0.64
CTCFP49711 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CTCFP49711 TMEM205-216ENST00000593256 792 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CTCFP49711 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC19.05■□□□□ 0.64
CTCFP49711 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
CTCFP49711 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
CTCFP49711 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CTCFP49711 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC19.05■□□□□ 0.64
CTCFP49711 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC19.05■□□□□ 0.64
CTCFP49711 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC19.05■□□□□ 0.64
CTCFP49711 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CTCFP49711 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CTCFP49711 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CTCFP49711 AC067852.2-201ENST00000590513 2313 ntBASIC19.05■□□□□ 0.64
CTCFP49711 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC19.05■□□□□ 0.64
CTCFP49711 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
CTCFP49711 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
CTCFP49711 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CTCFP49711 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
CTCFP49711 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CTCFP49711 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CTCFP49711 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
CTCFP49711 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CTCFP49711 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CTCFP49711 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
CTCFP49711 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CTCFP49711 RBM39-205ENST00000397370 612 ntTSL 2 BASIC19.04■□□□□ 0.64
CTCFP49711 TMEM177-203ENST00000409951 1216 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CTCFP49711 EGFEM1P-202ENST00000431685 1563 ntBASIC19.04■□□□□ 0.64
CTCFP49711 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
CTCFP49711 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC19.04■□□□□ 0.64
CTCFP49711 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC19.04■□□□□ 0.64
CTCFP49711 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms