Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
HTTP42858 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
HTTP42858 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
HTTP42858 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HTTP42858 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC18.28■□□□□ 0.52
HTTP42858 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
HTTP42858 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC18.28■□□□□ 0.52
HTTP42858 MIR3619-201ENST00000579667 83 ntBASIC18.28■□□□□ 0.52
HTTP42858 MIR6069-201ENST00000620069 79 ntBASIC18.28■□□□□ 0.52
HTTP42858 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HTTP42858 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC18.28■□□□□ 0.52
HTTP42858 BOC-212ENST00000485230 2173 ntTSL 2 BASIC18.28■□□□□ 0.52
HTTP42858 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
HTTP42858 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC18.27■□□□□ 0.52
HTTP42858 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC18.27■□□□□ 0.52
HTTP42858 MIR5572-201ENST00000583188 137 ntBASIC18.27■□□□□ 0.52
HTTP42858 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC18.27■□□□□ 0.52
HTTP42858 AC133539.2-201ENST00000604757 467 ntBASIC18.27■□□□□ 0.52
HTTP42858 LINC01115-203ENST00000606068 577 ntBASIC18.27■□□□□ 0.52
HTTP42858 AC138028.6-201ENST00000616106 1482 ntBASIC18.27■□□□□ 0.52
HTTP42858 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
HTTP42858 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC18.27■□□□□ 0.52
HTTP42858 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
HTTP42858 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC18.27■□□□□ 0.52
HTTP42858 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC18.27■□□□□ 0.52
HTTP42858 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC18.27■□□□□ 0.52
HTTP42858 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
HTTP42858 AC026740.1-201ENST00000607068 791 ntBASIC18.27■□□□□ 0.52
HTTP42858 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
HTTP42858 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
HTTP42858 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
HTTP42858 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
HTTP42858 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HTTP42858 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC18.27■□□□□ 0.51
HTTP42858 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC18.27■□□□□ 0.51
HTTP42858 AL607033.1-201ENST00000623900 1599 ntBASIC18.27■□□□□ 0.51
HTTP42858 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC18.27■□□□□ 0.51
HTTP42858 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC18.27■□□□□ 0.51
HTTP42858 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
HTTP42858 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.51
HTTP42858 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC18.27■□□□□ 0.51
HTTP42858 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC18.27■□□□□ 0.51
HTTP42858 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC18.27■□□□□ 0.51
HTTP42858 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC18.27■□□□□ 0.51
HTTP42858 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC18.27■□□□□ 0.51
HTTP42858 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
HTTP42858 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC18.27■□□□□ 0.51
HTTP42858 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HTTP42858 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HTTP42858 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HTTP42858 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HTTP42858 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HTTP42858 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
HTTP42858 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC18.26■□□□□ 0.51
HTTP42858 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HTTP42858 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HTTP42858 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HTTP42858 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
HTTP42858 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
HTTP42858 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
HTTP42858 SLC25A24P2-201ENST00000415059 510 ntBASIC18.26■□□□□ 0.51
HTTP42858 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC18.26■□□□□ 0.51
HTTP42858 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC18.26■□□□□ 0.51
HTTP42858 RPL13P2-201ENST00000440687 659 ntBASIC18.26■□□□□ 0.51
HTTP42858 AKR7A2P1-201ENST00000460134 915 ntBASIC18.26■□□□□ 0.51
HTTP42858 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
HTTP42858 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
HTTP42858 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HTTP42858 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
HTTP42858 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HTTP42858 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
HTTP42858 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC18.26■□□□□ 0.51
HTTP42858 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
HTTP42858 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HTTP42858 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
HTTP42858 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HTTP42858 OARD1-212ENST00000482515 832 ntTSL 2 BASIC18.26■□□□□ 0.51
HTTP42858 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC18.26■□□□□ 0.51
HTTP42858 MNT-208ENST00000575394 606 ntTSL 4 BASIC18.26■□□□□ 0.51
HTTP42858 ATF5-205ENST00000600336 682 ntTSL 2 BASIC18.26■□□□□ 0.51
HTTP42858 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
HTTP42858 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HTTP42858 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
HTTP42858 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
HTTP42858 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HTTP42858 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC18.25■□□□□ 0.51
HTTP42858 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
HTTP42858 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC18.25■□□□□ 0.51
HTTP42858 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC18.25■□□□□ 0.51
HTTP42858 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC18.25■□□□□ 0.51
HTTP42858 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
HTTP42858 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HTTP42858 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC18.25■□□□□ 0.51
HTTP42858 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HTTP42858 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
HTTP42858 AL355334.1-201ENST00000417713 215 ntBASIC18.25■□□□□ 0.51
HTTP42858 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC18.25■□□□□ 0.51
HTTP42858 EIF4HP1-201ENST00000453115 687 ntBASIC18.25■□□□□ 0.51
HTTP42858 BX284668.4-201ENST00000453917 508 ntBASIC18.25■□□□□ 0.51
HTTP42858 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC18.25■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms