Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HOXA9P31269 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
HOXA9P31269 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HOXA9P31269 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC17.11■□□□□ 0.33
HOXA9P31269 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HOXA9P31269 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
HOXA9P31269 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HOXA9P31269 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
HOXA9P31269 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HOXA9P31269 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
HOXA9P31269 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HOXA9P31269 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HOXA9P31269 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC17.11■□□□□ 0.33
HOXA9P31269 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
HOXA9P31269 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HOXA9P31269 DOC2GP-202ENST00000514950 1163 ntBASIC17.11■□□□□ 0.33
HOXA9P31269 NOP2-220ENST00000545915 630 ntTSL 2 BASIC17.11■□□□□ 0.33
HOXA9P31269 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC17.11■□□□□ 0.33
HOXA9P31269 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC17.11■□□□□ 0.33
HOXA9P31269 TEX48-202ENST00000612244 662 ntTSL 3 BASIC17.11■□□□□ 0.33
HOXA9P31269 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC17.11■□□□□ 0.33
HOXA9P31269 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC17.11■□□□□ 0.33
HOXA9P31269 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC17.11■□□□□ 0.33
HOXA9P31269 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HOXA9P31269 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
HOXA9P31269 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC17.11■□□□□ 0.33
HOXA9P31269 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HOXA9P31269 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
HOXA9P31269 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC17.11■□□□□ 0.33
HOXA9P31269 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HOXA9P31269 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HOXA9P31269 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HOXA9P31269 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC17.1■□□□□ 0.33
HOXA9P31269 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
HOXA9P31269 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HOXA9P31269 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC17.1■□□□□ 0.33
HOXA9P31269 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HOXA9P31269 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HOXA9P31269 AL645728.1-201ENST00000366221 2101 ntBASIC17.1■□□□□ 0.33
HOXA9P31269 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC17.1■□□□□ 0.33
HOXA9P31269 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC17.1■□□□□ 0.33
HOXA9P31269 SDHAP3-202ENST00000515467 728 ntBASIC17.1■□□□□ 0.33
HOXA9P31269 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HOXA9P31269 AC044860.1-202ENST00000559481 777 ntBASIC17.1■□□□□ 0.33
HOXA9P31269 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC17.1■□□□□ 0.33
HOXA9P31269 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC17.1■□□□□ 0.33
HOXA9P31269 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HOXA9P31269 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HOXA9P31269 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HOXA9P31269 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HOXA9P31269 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC17.1■□□□□ 0.33
HOXA9P31269 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HOXA9P31269 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HOXA9P31269 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HOXA9P31269 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HOXA9P31269 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
HOXA9P31269 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC17.1■□□□□ 0.33
HOXA9P31269 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HOXA9P31269 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HOXA9P31269 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HOXA9P31269 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC17.1■□□□□ 0.33
HOXA9P31269 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HOXA9P31269 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HOXA9P31269 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HOXA9P31269 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
HOXA9P31269 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC17.09■□□□□ 0.33
HOXA9P31269 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
HOXA9P31269 AL645608.8-201ENST00000606034 2086 ntBASIC17.09■□□□□ 0.33
HOXA9P31269 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HOXA9P31269 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HOXA9P31269 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
HOXA9P31269 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
HOXA9P31269 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HOXA9P31269 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HOXA9P31269 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC17.09■□□□□ 0.33
HOXA9P31269 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HOXA9P31269 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HOXA9P31269 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
HOXA9P31269 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HOXA9P31269 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HOXA9P31269 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC17.09■□□□□ 0.33
HOXA9P31269 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HOXA9P31269 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC17.09■□□□□ 0.33
HOXA9P31269 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HOXA9P31269 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HOXA9P31269 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HOXA9P31269 AP006294.1-201ENST00000415407 339 ntBASIC17.09■□□□□ 0.33
HOXA9P31269 MEP1AP4-201ENST00000423244 1087 ntBASIC17.09■□□□□ 0.33
HOXA9P31269 U91328.1-201ENST00000437528 223 ntBASIC17.09■□□□□ 0.33
HOXA9P31269 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC17.09■□□□□ 0.33
HOXA9P31269 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC17.09■□□□□ 0.33
HOXA9P31269 GNAQP1-201ENST00000444815 1067 ntBASIC17.09■□□□□ 0.33
HOXA9P31269 HLA-J-202ENST00000469281 1241 ntBASIC17.09■□□□□ 0.33
HOXA9P31269 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HOXA9P31269 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC17.09■□□□□ 0.33
HOXA9P31269 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC17.09■□□□□ 0.33
HOXA9P31269 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC17.09■□□□□ 0.33
HOXA9P31269 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC17.09■□□□□ 0.33
HOXA9P31269 AL008721.1-201ENST00000609964 604 ntBASIC17.09■□□□□ 0.33
HOXA9P31269 5S_rRNA.22-201ENST00000614916 106 ntBASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms