Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AC116165.1-201ENST00000611806 668 ntBASIC14.43□□□□□ -0.1
COL8A1P27658 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL8A1P27658 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC14.43□□□□□ -0.1
COL8A1P27658 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
COL8A1P27658 AC135776.1-201ENST00000319817 2481 ntBASIC14.43□□□□□ -0.1
COL8A1P27658 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL8A1P27658 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
COL8A1P27658 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC14.43□□□□□ -0.1
COL8A1P27658 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL8A1P27658 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL8A1P27658 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
COL8A1P27658 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC14.43□□□□□ -0.1
COL8A1P27658 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL8A1P27658 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
COL8A1P27658 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC14.42□□□□□ -0.1
COL8A1P27658 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC14.42□□□□□ -0.1
COL8A1P27658 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL8A1P27658 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL8A1P27658 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL8A1P27658 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC14.42□□□□□ -0.1
COL8A1P27658 REXO1L9P-201ENST00000604264 2108 ntBASIC14.42□□□□□ -0.1
COL8A1P27658 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL8A1P27658 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL8A1P27658 HARS-204ENST00000438307 1789 ntTSL 2 BASIC14.42□□□□□ -0.1
COL8A1P27658 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
COL8A1P27658 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC14.42□□□□□ -0.1
COL8A1P27658 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC14.42□□□□□ -0.1
COL8A1P27658 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL8A1P27658 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC14.42□□□□□ -0.1
COL8A1P27658 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC14.42□□□□□ -0.1
COL8A1P27658 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL8A1P27658 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
COL8A1P27658 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL8A1P27658 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC14.42□□□□□ -0.1
COL8A1P27658 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC14.42□□□□□ -0.1
COL8A1P27658 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC14.42□□□□□ -0.1
COL8A1P27658 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC14.42□□□□□ -0.1
COL8A1P27658 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC14.42□□□□□ -0.1
COL8A1P27658 AC073389.1-201ENST00000595595 795 ntBASIC14.42□□□□□ -0.1
COL8A1P27658 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
COL8A1P27658 TECR-220ENST00000600083 1204 ntTSL 2 BASIC14.42□□□□□ -0.1
COL8A1P27658 AL133215.2-201ENST00000609242 977 ntBASIC14.42□□□□□ -0.1
COL8A1P27658 WFDC1-204ENST00000613603 549 ntBASIC14.42□□□□□ -0.1
COL8A1P27658 5S_rRNA.22-201ENST00000614916 106 ntBASIC14.42□□□□□ -0.1
COL8A1P27658 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL8A1P27658 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
COL8A1P27658 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC14.42□□□□□ -0.1
COL8A1P27658 REXO1L11P-201ENST00000620964 1927 ntBASIC14.42□□□□□ -0.1
COL8A1P27658 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
COL8A1P27658 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL8A1P27658 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL8A1P27658 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
COL8A1P27658 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL8A1P27658 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
COL8A1P27658 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL8A1P27658 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
COL8A1P27658 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL8A1P27658 POR-209ENST00000439269 1858 ntTSL 2 BASIC14.42□□□□□ -0.1
COL8A1P27658 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL8A1P27658 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL8A1P27658 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL8A1P27658 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC14.41□□□□□ -0.1
COL8A1P27658 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC14.41□□□□□ -0.1
COL8A1P27658 AC093525.8-201ENST00000624099 1342 ntBASIC14.41□□□□□ -0.1
COL8A1P27658 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL8A1P27658 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC14.41□□□□□ -0.1
COL8A1P27658 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC14.41□□□□□ -0.1
COL8A1P27658 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL8A1P27658 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
COL8A1P27658 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL8A1P27658 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL8A1P27658 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL8A1P27658 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
COL8A1P27658 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
COL8A1P27658 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
COL8A1P27658 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
COL8A1P27658 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL8A1P27658 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC14.41□□□□□ -0.1
COL8A1P27658 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
COL8A1P27658 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
COL8A1P27658 STX1A-203ENST00000395155 783 ntTSL 2 BASIC14.41□□□□□ -0.1
COL8A1P27658 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL8A1P27658 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
COL8A1P27658 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
COL8A1P27658 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC14.41□□□□□ -0.1
COL8A1P27658 AC108725.1-201ENST00000495472 409 ntBASIC14.41□□□□□ -0.1
COL8A1P27658 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC14.41□□□□□ -0.1
COL8A1P27658 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC14.41□□□□□ -0.1
COL8A1P27658 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC14.41□□□□□ -0.1
COL8A1P27658 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC14.41□□□□□ -0.1
COL8A1P27658 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC14.41□□□□□ -0.1
COL8A1P27658 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC14.41□□□□□ -0.1
COL8A1P27658 TEX48-202ENST00000612244 662 ntTSL 3 BASIC14.41□□□□□ -0.1
COL8A1P27658 AL139327.4-201ENST00000612362 153 ntBASIC14.41□□□□□ -0.1
COL8A1P27658 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC14.41□□□□□ -0.1
COL8A1P27658 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
COL8A1P27658 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL8A1P27658 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL8A1P27658 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL8A1P27658 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms