Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
MSH3P20585 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
MSH3P20585 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC16.51■□□□□ 0.23
MSH3P20585 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
MSH3P20585 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
MSH3P20585 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
MSH3P20585 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
MSH3P20585 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC16.51■□□□□ 0.23
MSH3P20585 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
MSH3P20585 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
MSH3P20585 BX842568.4-201ENST00000421222 227 ntBASIC16.51■□□□□ 0.23
MSH3P20585 COX10-202ENST00000429152 875 ntTSL 2 BASIC16.51■□□□□ 0.23
MSH3P20585 FIS1-203ENST00000442303 631 ntTSL 3 BASIC16.51■□□□□ 0.23
MSH3P20585 DNAJB3-201ENST00000446806 729 ntBASIC16.51■□□□□ 0.23
MSH3P20585 AC112191.1-201ENST00000523689 701 ntBASIC16.51■□□□□ 0.23
MSH3P20585 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC16.51■□□□□ 0.23
MSH3P20585 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC16.51■□□□□ 0.23
MSH3P20585 AC021097.1-201ENST00000607902 574 ntBASIC16.51■□□□□ 0.23
MSH3P20585 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC16.51■□□□□ 0.23
MSH3P20585 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
MSH3P20585 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
MSH3P20585 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC16.51■□□□□ 0.23
MSH3P20585 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC16.51■□□□□ 0.23
MSH3P20585 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
MSH3P20585 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
MSH3P20585 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC16.51■□□□□ 0.23
MSH3P20585 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC16.51■□□□□ 0.23
MSH3P20585 PKD1P5-201ENST00000532415 10291 ntBASIC16.51■□□□□ 0.23
MSH3P20585 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC16.51■□□□□ 0.23
MSH3P20585 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
MSH3P20585 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
MSH3P20585 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC16.5■□□□□ 0.23
MSH3P20585 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC16.5■□□□□ 0.23
MSH3P20585 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC16.5■□□□□ 0.23
MSH3P20585 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
MSH3P20585 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC16.5■□□□□ 0.23
MSH3P20585 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
MSH3P20585 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
MSH3P20585 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
MSH3P20585 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
MSH3P20585 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
MSH3P20585 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
MSH3P20585 YBX2P1-201ENST00000394192 760 ntBASIC16.5■□□□□ 0.23
MSH3P20585 AC002056.1-201ENST00000395613 760 ntBASIC16.5■□□□□ 0.23
MSH3P20585 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
MSH3P20585 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
MSH3P20585 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC16.5■□□□□ 0.23
MSH3P20585 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
MSH3P20585 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
MSH3P20585 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC16.5■□□□□ 0.23
MSH3P20585 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC16.5■□□□□ 0.23
MSH3P20585 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC16.5■□□□□ 0.23
MSH3P20585 AP002472.1-201ENST00000577490 586 ntBASIC16.5■□□□□ 0.23
MSH3P20585 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
MSH3P20585 MIR3909-201ENST00000579518 119 ntBASIC16.5■□□□□ 0.23
MSH3P20585 AL009183.1-201ENST00000603760 355 ntBASIC16.5■□□□□ 0.23
MSH3P20585 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
MSH3P20585 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC16.5■□□□□ 0.23
MSH3P20585 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC16.5■□□□□ 0.23
MSH3P20585 HLA-A-202ENST00000376806 1854 ntBASIC16.5■□□□□ 0.23
MSH3P20585 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
MSH3P20585 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC16.5■□□□□ 0.23
MSH3P20585 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
MSH3P20585 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
MSH3P20585 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC16.5■□□□□ 0.23
MSH3P20585 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
MSH3P20585 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC16.5■□□□□ 0.23
MSH3P20585 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
MSH3P20585 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC16.5■□□□□ 0.23
MSH3P20585 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
MSH3P20585 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
MSH3P20585 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
MSH3P20585 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
MSH3P20585 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
MSH3P20585 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
MSH3P20585 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
MSH3P20585 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC16.49■□□□□ 0.23
MSH3P20585 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
MSH3P20585 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
MSH3P20585 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
MSH3P20585 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
MSH3P20585 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
MSH3P20585 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
MSH3P20585 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
MSH3P20585 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC16.49■□□□□ 0.23
MSH3P20585 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
MSH3P20585 AC092865.5-201ENST00000545435 363 ntBASIC16.49■□□□□ 0.23
MSH3P20585 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC16.49■□□□□ 0.23
MSH3P20585 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
MSH3P20585 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
MSH3P20585 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC16.49■□□□□ 0.23
MSH3P20585 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC16.49■□□□□ 0.23
MSH3P20585 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC16.49■□□□□ 0.23
MSH3P20585 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
MSH3P20585 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC16.49■□□□□ 0.23
MSH3P20585 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
MSH3P20585 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC16.49■□□□□ 0.23
MSH3P20585 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
MSH3P20585 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
MSH3P20585 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC16.49■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 70.2 ms