Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 POM121L10P-201ENST00000436994 1285 ntBASIC16.91■□□□□ 0.3
COL6A3P12111 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC16.91■□□□□ 0.3
COL6A3P12111 AL118516.1-201ENST00000564152 670 ntBASIC16.91■□□□□ 0.3
COL6A3P12111 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC16.91■□□□□ 0.3
COL6A3P12111 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC16.91■□□□□ 0.3
COL6A3P12111 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL6A3P12111 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL6A3P12111 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC16.91■□□□□ 0.3
COL6A3P12111 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC16.91■□□□□ 0.3
COL6A3P12111 AC116562.4-201ENST00000641316 2276 ntBASIC16.91■□□□□ 0.3
COL6A3P12111 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
COL6A3P12111 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL6A3P12111 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
COL6A3P12111 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL6A3P12111 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL6A3P12111 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL6A3P12111 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC16.91■□□□□ 0.3
COL6A3P12111 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC16.91■□□□□ 0.3
COL6A3P12111 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC16.91■□□□□ 0.3
COL6A3P12111 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC16.91■□□□□ 0.3
COL6A3P12111 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
COL6A3P12111 AIPL1-211ENST00000576776 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL6A3P12111 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC16.91■□□□□ 0.3
COL6A3P12111 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC16.91■□□□□ 0.3
COL6A3P12111 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL6A3P12111 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
COL6A3P12111 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL6A3P12111 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL6A3P12111 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
COL6A3P12111 PGAP2-208ENST00000464229 863 ntTSL 3 BASIC16.9■□□□□ 0.3
COL6A3P12111 AHRR-211ENST00000515206 462 ntTSL 5 BASIC16.9■□□□□ 0.3
COL6A3P12111 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
COL6A3P12111 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC16.9■□□□□ 0.3
COL6A3P12111 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC16.9■□□□□ 0.3
COL6A3P12111 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC16.9■□□□□ 0.3
COL6A3P12111 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
COL6A3P12111 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL6A3P12111 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC16.9■□□□□ 0.3
COL6A3P12111 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
COL6A3P12111 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC16.9■□□□□ 0.3
COL6A3P12111 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL6A3P12111 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
COL6A3P12111 CST9L-201ENST00000376979 959 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL6A3P12111 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC16.9■□□□□ 0.3
COL6A3P12111 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
COL6A3P12111 BRI3P1-201ENST00000440440 378 ntBASIC16.9■□□□□ 0.3
COL6A3P12111 LINC01056-201ENST00000455711 1234 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
COL6A3P12111 NSD1-211ENST00000511258 809 ntTSL 3 BASIC16.9■□□□□ 0.3
COL6A3P12111 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC16.9■□□□□ 0.3
COL6A3P12111 ZNF790-AS1-203ENST00000588906 850 ntTSL 2 BASIC16.9■□□□□ 0.3
COL6A3P12111 METTL26-214ENST00000614890 801 ntTSL 3 BASIC16.9■□□□□ 0.3
COL6A3P12111 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC16.9■□□□□ 0.3
COL6A3P12111 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
COL6A3P12111 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
COL6A3P12111 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.3
COL6A3P12111 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC16.89■□□□□ 0.3
COL6A3P12111 AC008132.1-202ENST00000342005 1389 ntBASIC16.89■□□□□ 0.3
COL6A3P12111 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
COL6A3P12111 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
COL6A3P12111 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
COL6A3P12111 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
COL6A3P12111 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
COL6A3P12111 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC16.89■□□□□ 0.3
COL6A3P12111 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC16.89■□□□□ 0.3
COL6A3P12111 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC16.89■□□□□ 0.29
COL6A3P12111 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL6A3P12111 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
COL6A3P12111 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
COL6A3P12111 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
COL6A3P12111 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL6A3P12111 SNHG17-208ENST00000456953 546 ntTSL 3 BASIC16.89■□□□□ 0.29
COL6A3P12111 AC011472.1-201ENST00000588634 569 ntTSL 4 BASIC16.89■□□□□ 0.29
COL6A3P12111 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
COL6A3P12111 CDK7-214ENST00000626796 358 ntTSL 5 BASIC16.89■□□□□ 0.29
COL6A3P12111 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC16.89■□□□□ 0.29
COL6A3P12111 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL6A3P12111 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC16.89■□□□□ 0.29
COL6A3P12111 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL6A3P12111 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
COL6A3P12111 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
COL6A3P12111 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
COL6A3P12111 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC16.89■□□□□ 0.29
COL6A3P12111 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC16.89■□□□□ 0.29
COL6A3P12111 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
COL6A3P12111 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL6A3P12111 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL6A3P12111 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL6A3P12111 AC134312.5-201ENST00000568031 1313 ntBASIC16.89■□□□□ 0.29
COL6A3P12111 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL6A3P12111 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL6A3P12111 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
COL6A3P12111 AC010234.1-201ENST00000494599 870 ntBASIC16.89■□□□□ 0.29
COL6A3P12111 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
COL6A3P12111 AC023310.1-201ENST00000554836 735 ntBASIC16.89■□□□□ 0.29
COL6A3P12111 PRMT5-AS1-206ENST00000599580 847 ntTSL 5 BASIC16.89■□□□□ 0.29
COL6A3P12111 LINC01115-203ENST00000606068 577 ntBASIC16.89■□□□□ 0.29
COL6A3P12111 AP001350.2-201ENST00000625104 1094 ntBASIC16.89■□□□□ 0.29
COL6A3P12111 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
COL6A3P12111 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC16.89■□□□□ 0.29
COL6A3P12111 AL031598.1-201ENST00000561511 1773 ntBASIC16.89■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms