Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
HLA-DQA1P01909 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC12.52□□□□□ -0.41
HLA-DQA1P01909 SNX21-213ENST00000614929 587 ntTSL 5 BASIC12.52□□□□□ -0.41
HLA-DQA1P01909 AC009154.2-201ENST00000621177 724 ntBASIC12.52□□□□□ -0.41
HLA-DQA1P01909 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC12.52□□□□□ -0.41
HLA-DQA1P01909 CICP4-201ENST00000447359 2812 ntBASIC12.52□□□□□ -0.41
HLA-DQA1P01909 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
HLA-DQA1P01909 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC12.52□□□□□ -0.41
HLA-DQA1P01909 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
HLA-DQA1P01909 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
HLA-DQA1P01909 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC12.52□□□□□ -0.41
HLA-DQA1P01909 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
HLA-DQA1P01909 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC12.52□□□□□ -0.41
HLA-DQA1P01909 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC12.52□□□□□ -0.41
HLA-DQA1P01909 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC12.52□□□□□ -0.41
HLA-DQA1P01909 PBK-203ENST00000522944 1499 ntTSL 2 BASIC12.52□□□□□ -0.41
HLA-DQA1P01909 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC12.52□□□□□ -0.41
HLA-DQA1P01909 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC12.52□□□□□ -0.41
HLA-DQA1P01909 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
HLA-DQA1P01909 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.41
HLA-DQA1P01909 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
HLA-DQA1P01909 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
HLA-DQA1P01909 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC12.52□□□□□ -0.41
HLA-DQA1P01909 LINC02447-202ENST00000501888 2146 ntBASIC12.52□□□□□ -0.41
HLA-DQA1P01909 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
HLA-DQA1P01909 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
HLA-DQA1P01909 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC12.52□□□□□ -0.41
HLA-DQA1P01909 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.41
HLA-DQA1P01909 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
HLA-DQA1P01909 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC12.51□□□□□ -0.41
HLA-DQA1P01909 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HLA-DQA1P01909 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
HLA-DQA1P01909 CDC14C-201ENST00000428251 1719 ntBASIC12.51□□□□□ -0.41
HLA-DQA1P01909 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
HLA-DQA1P01909 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC12.51□□□□□ -0.41
HLA-DQA1P01909 AC087386.2-201ENST00000623212 4637 ntBASIC12.51□□□□□ -0.41
HLA-DQA1P01909 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HLA-DQA1P01909 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC12.51□□□□□ -0.41
HLA-DQA1P01909 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
HLA-DQA1P01909 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
HLA-DQA1P01909 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC12.51□□□□□ -0.41
HLA-DQA1P01909 LINC01101-201ENST00000622953 1884 ntBASIC12.51□□□□□ -0.41
HLA-DQA1P01909 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HLA-DQA1P01909 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
HLA-DQA1P01909 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
HLA-DQA1P01909 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
HLA-DQA1P01909 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC12.51□□□□□ -0.41
HLA-DQA1P01909 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HLA-DQA1P01909 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HLA-DQA1P01909 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC12.51□□□□□ -0.41
HLA-DQA1P01909 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC12.51□□□□□ -0.41
HLA-DQA1P01909 CNP-204ENST00000472031 1019 ntTSL 2 BASIC12.51□□□□□ -0.41
HLA-DQA1P01909 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC12.51□□□□□ -0.41
HLA-DQA1P01909 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC12.51□□□□□ -0.41
HLA-DQA1P01909 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC12.51□□□□□ -0.41
HLA-DQA1P01909 FITM1-202ENST00000559294 800 ntBASIC12.51□□□□□ -0.41
HLA-DQA1P01909 NAPSB-206ENST00000562112 1266 ntBASIC12.51□□□□□ -0.41
HLA-DQA1P01909 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
HLA-DQA1P01909 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
HLA-DQA1P01909 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC12.51□□□□□ -0.41
HLA-DQA1P01909 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HLA-DQA1P01909 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
HLA-DQA1P01909 SSR4P1-203ENST00000599569 2260 ntBASIC12.51□□□□□ -0.41
HLA-DQA1P01909 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HLA-DQA1P01909 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
HLA-DQA1P01909 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HLA-DQA1P01909 RPP14-202ENST00000445193 7985 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HLA-DQA1P01909 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
HLA-DQA1P01909 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC12.51□□□□□ -0.41
HLA-DQA1P01909 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC12.51□□□□□ -0.41
HLA-DQA1P01909 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HLA-DQA1P01909 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC12.51□□□□□ -0.41
HLA-DQA1P01909 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
HLA-DQA1P01909 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
HLA-DQA1P01909 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC12.51□□□□□ -0.41
HLA-DQA1P01909 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HLA-DQA1P01909 AC112504.1-201ENST00000623415 1841 ntBASIC12.51□□□□□ -0.41
HLA-DQA1P01909 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HLA-DQA1P01909 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
HLA-DQA1P01909 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HLA-DQA1P01909 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HLA-DQA1P01909 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
HLA-DQA1P01909 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
HLA-DQA1P01909 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
HLA-DQA1P01909 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HLA-DQA1P01909 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
HLA-DQA1P01909 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
HLA-DQA1P01909 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
HLA-DQA1P01909 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
HLA-DQA1P01909 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
HLA-DQA1P01909 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC12.5□□□□□ -0.41
HLA-DQA1P01909 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
HLA-DQA1P01909 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
HLA-DQA1P01909 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC12.5□□□□□ -0.41
HLA-DQA1P01909 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC12.5□□□□□ -0.41
HLA-DQA1P01909 AC116562.4-202ENST00000641738 218 ntBASIC12.5□□□□□ -0.41
HLA-DQA1P01909 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HLA-DQA1P01909 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HLA-DQA1P01909 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HLA-DQA1P01909 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms