Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
CTDNEP1O95476 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CTDNEP1O95476 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CTDNEP1O95476 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CTDNEP1O95476 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CTDNEP1O95476 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC19.12■□□□□ 0.65
CTDNEP1O95476 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CTDNEP1O95476 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
CTDNEP1O95476 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
CTDNEP1O95476 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
CTDNEP1O95476 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
CTDNEP1O95476 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
CTDNEP1O95476 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC19.12■□□□□ 0.65
CTDNEP1O95476 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CTDNEP1O95476 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CTDNEP1O95476 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CTDNEP1O95476 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC19.12■□□□□ 0.65
CTDNEP1O95476 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC19.12■□□□□ 0.65
CTDNEP1O95476 SMN2-210ENST00000511812 867 ntTSL 2 BASIC19.12■□□□□ 0.65
CTDNEP1O95476 CFL1-202ENST00000524553 860 ntTSL 2 BASIC19.12■□□□□ 0.65
CTDNEP1O95476 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
CTDNEP1O95476 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
CTDNEP1O95476 AC068137.2-201ENST00000605408 478 ntBASIC19.12■□□□□ 0.65
CTDNEP1O95476 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CTDNEP1O95476 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC19.12■□□□□ 0.65
CTDNEP1O95476 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CTDNEP1O95476 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CTDNEP1O95476 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC19.12■□□□□ 0.65
CTDNEP1O95476 AC046158.3-201ENST00000624947 2558 ntBASIC19.12■□□□□ 0.65
CTDNEP1O95476 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC19.11■□□□□ 0.65
CTDNEP1O95476 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CTDNEP1O95476 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CTDNEP1O95476 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC19.11■□□□□ 0.65
CTDNEP1O95476 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CTDNEP1O95476 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC19.11■□□□□ 0.65
CTDNEP1O95476 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC19.11■□□□□ 0.65
CTDNEP1O95476 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
CTDNEP1O95476 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC19.11■□□□□ 0.65
CTDNEP1O95476 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC19.11■□□□□ 0.65
CTDNEP1O95476 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CTDNEP1O95476 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CTDNEP1O95476 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CTDNEP1O95476 REM2-202ENST00000536884 1331 ntTSL 2 BASIC19.11■□□□□ 0.65
CTDNEP1O95476 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CTDNEP1O95476 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC19.11■□□□□ 0.65
CTDNEP1O95476 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC19.11■□□□□ 0.65
CTDNEP1O95476 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
CTDNEP1O95476 AL671883.3-201ENST00000603274 991 ntBASIC19.11■□□□□ 0.65
CTDNEP1O95476 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
CTDNEP1O95476 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CTDNEP1O95476 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
CTDNEP1O95476 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC19.11■□□□□ 0.65
CTDNEP1O95476 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC19.11■□□□□ 0.65
CTDNEP1O95476 AC073439.1-201ENST00000624121 1774 ntBASIC19.11■□□□□ 0.65
CTDNEP1O95476 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC19.11■□□□□ 0.65
CTDNEP1O95476 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CTDNEP1O95476 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
CTDNEP1O95476 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CTDNEP1O95476 ABR-203ENST00000536794 2213 ntTSL 2 BASIC19.1■□□□□ 0.65
CTDNEP1O95476 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CTDNEP1O95476 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CTDNEP1O95476 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CTDNEP1O95476 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CTDNEP1O95476 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CTDNEP1O95476 AC112504.1-201ENST00000623415 1841 ntBASIC19.1■□□□□ 0.65
CTDNEP1O95476 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
CTDNEP1O95476 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC19.1■□□□□ 0.65
CTDNEP1O95476 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CTDNEP1O95476 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CTDNEP1O95476 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CTDNEP1O95476 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CTDNEP1O95476 AL591424.1-201ENST00000442569 1213 ntBASIC19.1■□□□□ 0.65
CTDNEP1O95476 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CTDNEP1O95476 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
CTDNEP1O95476 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CTDNEP1O95476 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CTDNEP1O95476 RNA5SP416-201ENST00000516838 111 ntBASIC19.1■□□□□ 0.65
CTDNEP1O95476 CBFB-203ENST00000561924 584 ntTSL 5 BASIC19.1■□□□□ 0.65
CTDNEP1O95476 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CTDNEP1O95476 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CTDNEP1O95476 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
CTDNEP1O95476 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CTDNEP1O95476 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CTDNEP1O95476 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC19.1■□□□□ 0.65
CTDNEP1O95476 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC19.1■□□□□ 0.65
CTDNEP1O95476 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CTDNEP1O95476 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
CTDNEP1O95476 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC19.1■□□□□ 0.65
CTDNEP1O95476 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CTDNEP1O95476 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CTDNEP1O95476 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC19.09■□□□□ 0.65
CTDNEP1O95476 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CTDNEP1O95476 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CTDNEP1O95476 PAUPAR-201ENST00000630360 2965 ntBASIC19.09■□□□□ 0.65
CTDNEP1O95476 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC19.09■□□□□ 0.65
CTDNEP1O95476 CDC14C-201ENST00000428251 1719 ntBASIC19.09■□□□□ 0.65
CTDNEP1O95476 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC19.09■□□□□ 0.65
CTDNEP1O95476 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
CTDNEP1O95476 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
CTDNEP1O95476 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms