Protein–RNA interactions for Protein: O95096

NKX2-2, Homeobox protein Nkx-2.2, humanhuman

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-2O95096 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC15.26■□□□□ 0.03
NKX2-2O95096 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
NKX2-2O95096 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
NKX2-2O95096 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
NKX2-2O95096 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
NKX2-2O95096 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC15.26■□□□□ 0.03
NKX2-2O95096 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
NKX2-2O95096 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC15.26■□□□□ 0.03
NKX2-2O95096 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
NKX2-2O95096 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC15.26■□□□□ 0.03
NKX2-2O95096 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
NKX2-2O95096 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
NKX2-2O95096 MIR940-201ENST00000401276 94 ntBASIC15.26■□□□□ 0.03
NKX2-2O95096 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC15.26■□□□□ 0.03
NKX2-2O95096 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
NKX2-2O95096 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC15.26■□□□□ 0.03
NKX2-2O95096 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
NKX2-2O95096 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
NKX2-2O95096 AC099522.2-201ENST00000607001 744 ntBASIC15.26■□□□□ 0.03
NKX2-2O95096 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC15.26■□□□□ 0.03
NKX2-2O95096 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC15.26■□□□□ 0.03
NKX2-2O95096 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC15.26■□□□□ 0.03
NKX2-2O95096 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC15.26■□□□□ 0.03
NKX2-2O95096 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC15.26■□□□□ 0.03
NKX2-2O95096 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
NKX2-2O95096 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
NKX2-2O95096 AL391005.1-201ENST00000623953 2435 ntBASIC15.26■□□□□ 0.03
NKX2-2O95096 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
NKX2-2O95096 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
NKX2-2O95096 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
NKX2-2O95096 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
NKX2-2O95096 AL513523.2-202ENST00000427283 2040 ntBASIC15.26■□□□□ 0.03
NKX2-2O95096 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC15.26■□□□□ 0.03
NKX2-2O95096 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC15.26■□□□□ 0.03
NKX2-2O95096 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
NKX2-2O95096 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC15.25■□□□□ 0.03
NKX2-2O95096 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
NKX2-2O95096 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC15.25■□□□□ 0.03
NKX2-2O95096 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
NKX2-2O95096 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
NKX2-2O95096 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC15.25■□□□□ 0.03
NKX2-2O95096 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
NKX2-2O95096 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
NKX2-2O95096 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC15.25■□□□□ 0.03
NKX2-2O95096 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
NKX2-2O95096 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
NKX2-2O95096 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
NKX2-2O95096 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
NKX2-2O95096 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
NKX2-2O95096 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
NKX2-2O95096 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
NKX2-2O95096 AC093724.1-201ENST00000448659 1027 ntBASIC15.25■□□□□ 0.03
NKX2-2O95096 POLD2P1-201ENST00000511220 997 ntBASIC15.25■□□□□ 0.03
NKX2-2O95096 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC15.25■□□□□ 0.03
NKX2-2O95096 AC002347.1-201ENST00000569543 541 ntBASIC15.25■□□□□ 0.03
NKX2-2O95096 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
NKX2-2O95096 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC15.25■□□□□ 0.03
NKX2-2O95096 AL671883.3-201ENST00000603274 991 ntBASIC15.25■□□□□ 0.03
NKX2-2O95096 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
NKX2-2O95096 AL592424.1-201ENST00000563624 1536 ntBASIC15.25■□□□□ 0.03
NKX2-2O95096 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC15.25■□□□□ 0.03
NKX2-2O95096 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
NKX2-2O95096 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
NKX2-2O95096 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
NKX2-2O95096 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
NKX2-2O95096 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
NKX2-2O95096 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
NKX2-2O95096 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
NKX2-2O95096 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
NKX2-2O95096 U82695.1-201ENST00000635752 1889 ntBASIC15.25■□□□□ 0.03
NKX2-2O95096 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
NKX2-2O95096 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC15.24■□□□□ 0.03
NKX2-2O95096 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
NKX2-2O95096 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
NKX2-2O95096 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC15.24■□□□□ 0.03
NKX2-2O95096 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
NKX2-2O95096 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC15.24■□□□□ 0.03
NKX2-2O95096 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
NKX2-2O95096 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
NKX2-2O95096 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
NKX2-2O95096 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC15.24■□□□□ 0.03
NKX2-2O95096 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC15.24■□□□□ 0.03
NKX2-2O95096 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC15.24■□□□□ 0.03
NKX2-2O95096 AL596087.1-201ENST00000400979 1969 ntBASIC15.24■□□□□ 0.03
NKX2-2O95096 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
NKX2-2O95096 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
NKX2-2O95096 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC15.24■□□□□ 0.03
NKX2-2O95096 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC15.24■□□□□ 0.03
NKX2-2O95096 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
NKX2-2O95096 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
NKX2-2O95096 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
NKX2-2O95096 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC15.24■□□□□ 0.03
NKX2-2O95096 MCCD1P2-201ENST00000423228 335 ntBASIC15.24■□□□□ 0.03
NKX2-2O95096 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC15.24■□□□□ 0.03
NKX2-2O95096 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC15.24■□□□□ 0.03
NKX2-2O95096 QPRT-203ENST00000562473 579 ntTSL 3 BASIC15.24■□□□□ 0.03
NKX2-2O95096 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
NKX2-2O95096 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC15.24■□□□□ 0.03
NKX2-2O95096 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
NKX2-2O95096 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms