Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
LMX1BO60663 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
LMX1BO60663 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
LMX1BO60663 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
LMX1BO60663 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
LMX1BO60663 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
LMX1BO60663 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC14.62□□□□□ -0.07
LMX1BO60663 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
LMX1BO60663 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC14.62□□□□□ -0.07
LMX1BO60663 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC14.62□□□□□ -0.07
LMX1BO60663 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC14.61□□□□□ -0.07
LMX1BO60663 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC14.61□□□□□ -0.07
LMX1BO60663 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC14.61□□□□□ -0.07
LMX1BO60663 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC14.61□□□□□ -0.07
LMX1BO60663 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
LMX1BO60663 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
LMX1BO60663 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC14.61□□□□□ -0.07
LMX1BO60663 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
LMX1BO60663 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
LMX1BO60663 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
LMX1BO60663 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
LMX1BO60663 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
LMX1BO60663 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC14.61□□□□□ -0.07
LMX1BO60663 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
LMX1BO60663 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
LMX1BO60663 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC14.61□□□□□ -0.07
LMX1BO60663 SNX33P1-201ENST00000592116 1762 ntBASIC14.61□□□□□ -0.07
LMX1BO60663 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
LMX1BO60663 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC14.61□□□□□ -0.07
LMX1BO60663 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
LMX1BO60663 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
LMX1BO60663 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
LMX1BO60663 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
LMX1BO60663 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC14.61□□□□□ -0.07
LMX1BO60663 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC14.61□□□□□ -0.07
LMX1BO60663 DNAJB3-202ENST00000449667 1266 ntBASIC14.61□□□□□ -0.07
LMX1BO60663 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC14.61□□□□□ -0.07
LMX1BO60663 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
LMX1BO60663 RPS15-207ENST00000591032 550 ntTSL 3 BASIC14.61□□□□□ -0.07
LMX1BO60663 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC14.61□□□□□ -0.07
LMX1BO60663 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC14.61□□□□□ -0.07
LMX1BO60663 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
LMX1BO60663 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC14.61□□□□□ -0.07
LMX1BO60663 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC14.61□□□□□ -0.07
LMX1BO60663 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
LMX1BO60663 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
LMX1BO60663 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
LMX1BO60663 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
LMX1BO60663 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
LMX1BO60663 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC14.61□□□□□ -0.07
LMX1BO60663 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
LMX1BO60663 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC14.61□□□□□ -0.07
LMX1BO60663 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC14.61□□□□□ -0.07
LMX1BO60663 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
LMX1BO60663 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
LMX1BO60663 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC14.6□□□□□ -0.07
LMX1BO60663 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC14.6□□□□□ -0.07
LMX1BO60663 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
LMX1BO60663 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC14.6□□□□□ -0.07
LMX1BO60663 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC14.6□□□□□ -0.07
LMX1BO60663 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
LMX1BO60663 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
LMX1BO60663 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
LMX1BO60663 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
LMX1BO60663 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC14.6□□□□□ -0.07
LMX1BO60663 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
LMX1BO60663 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC14.6□□□□□ -0.07
LMX1BO60663 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC14.6□□□□□ -0.07
LMX1BO60663 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
LMX1BO60663 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
LMX1BO60663 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
LMX1BO60663 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC14.6□□□□□ -0.07
LMX1BO60663 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
LMX1BO60663 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC14.6□□□□□ -0.07
LMX1BO60663 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.07
LMX1BO60663 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC14.6□□□□□ -0.07
LMX1BO60663 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC14.6□□□□□ -0.07
LMX1BO60663 HLA-J-202ENST00000469281 1241 ntBASIC14.6□□□□□ -0.07
LMX1BO60663 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC14.6□□□□□ -0.07
LMX1BO60663 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
LMX1BO60663 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC14.6□□□□□ -0.07
LMX1BO60663 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC14.6□□□□□ -0.07
LMX1BO60663 LINC02084-201ENST00000606069 1096 ntBASIC14.6□□□□□ -0.07
LMX1BO60663 AC064836.3-201ENST00000607928 673 ntBASIC14.6□□□□□ -0.07
LMX1BO60663 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC14.6□□□□□ -0.07
LMX1BO60663 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC14.6□□□□□ -0.07
LMX1BO60663 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
LMX1BO60663 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC14.6□□□□□ -0.07
LMX1BO60663 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC14.6□□□□□ -0.07
LMX1BO60663 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
LMX1BO60663 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
LMX1BO60663 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
LMX1BO60663 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
LMX1BO60663 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
LMX1BO60663 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC14.6□□□□□ -0.07
LMX1BO60663 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC14.6□□□□□ -0.07
LMX1BO60663 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC14.6□□□□□ -0.07
LMX1BO60663 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
LMX1BO60663 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
LMX1BO60663 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms