Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC16.79■□□□□ 0.28
HOXC11O43248 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC16.79■□□□□ 0.28
HOXC11O43248 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
HOXC11O43248 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC16.78■□□□□ 0.28
HOXC11O43248 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HOXC11O43248 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HOXC11O43248 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
HOXC11O43248 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HOXC11O43248 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
HOXC11O43248 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HOXC11O43248 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HOXC11O43248 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HOXC11O43248 AC087499.5-201ENST00000452760 1342 ntBASIC16.78■□□□□ 0.28
HOXC11O43248 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HOXC11O43248 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HOXC11O43248 AL645608.8-201ENST00000606034 2086 ntBASIC16.78■□□□□ 0.28
HOXC11O43248 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
HOXC11O43248 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
HOXC11O43248 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC16.78■□□□□ 0.28
HOXC11O43248 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HOXC11O43248 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HOXC11O43248 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HOXC11O43248 COPE-202ENST00000349893 948 ntTSL 2 BASIC16.78■□□□□ 0.28
HOXC11O43248 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HOXC11O43248 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HOXC11O43248 RPL37AP1-201ENST00000412502 279 ntBASIC16.78■□□□□ 0.28
HOXC11O43248 GOLGA6L11P-201ENST00000417252 1298 ntBASIC16.78■□□□□ 0.28
HOXC11O43248 PNKD-204ENST00000436005 978 ntTSL 5 BASIC16.78■□□□□ 0.28
HOXC11O43248 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
HOXC11O43248 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HOXC11O43248 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC16.78■□□□□ 0.28
HOXC11O43248 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC16.78■□□□□ 0.28
HOXC11O43248 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC16.78■□□□□ 0.28
HOXC11O43248 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC16.78■□□□□ 0.28
HOXC11O43248 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC16.78■□□□□ 0.28
HOXC11O43248 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC16.78■□□□□ 0.28
HOXC11O43248 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC16.78■□□□□ 0.28
HOXC11O43248 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC16.78■□□□□ 0.28
HOXC11O43248 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC16.78■□□□□ 0.28
HOXC11O43248 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HOXC11O43248 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
HOXC11O43248 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC16.78■□□□□ 0.28
HOXC11O43248 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC16.78■□□□□ 0.28
HOXC11O43248 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
HOXC11O43248 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
HOXC11O43248 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC16.78■□□□□ 0.28
HOXC11O43248 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
HOXC11O43248 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HOXC11O43248 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HOXC11O43248 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HOXC11O43248 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
HOXC11O43248 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC16.78■□□□□ 0.28
HOXC11O43248 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
HOXC11O43248 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HOXC11O43248 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
HOXC11O43248 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC16.77■□□□□ 0.28
HOXC11O43248 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
HOXC11O43248 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
HOXC11O43248 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HOXC11O43248 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC16.77■□□□□ 0.28
HOXC11O43248 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
HOXC11O43248 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
HOXC11O43248 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
HOXC11O43248 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HOXC11O43248 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
HOXC11O43248 AC138932.1-201ENST00000534164 6830 ntBASIC16.77■□□□□ 0.28
HOXC11O43248 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HOXC11O43248 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
HOXC11O43248 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
HOXC11O43248 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
HOXC11O43248 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
HOXC11O43248 AL080243.2-201ENST00000418783 582 ntBASIC16.77■□□□□ 0.28
HOXC11O43248 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
HOXC11O43248 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC16.77■□□□□ 0.28
HOXC11O43248 AL079307.3-201ENST00000556114 283 ntBASIC16.77■□□□□ 0.28
HOXC11O43248 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
HOXC11O43248 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC16.77■□□□□ 0.28
HOXC11O43248 AL844908.2-201ENST00000609461 460 ntBASIC16.77■□□□□ 0.28
HOXC11O43248 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC16.77■□□□□ 0.28
HOXC11O43248 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HOXC11O43248 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC16.77■□□□□ 0.27
HOXC11O43248 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
HOXC11O43248 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.27
HOXC11O43248 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
HOXC11O43248 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
HOXC11O43248 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC16.77■□□□□ 0.27
HOXC11O43248 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
HOXC11O43248 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
HOXC11O43248 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
HOXC11O43248 AL603756.1-201ENST00000606511 2163 ntBASIC16.77■□□□□ 0.27
HOXC11O43248 TDG-209ENST00000544861 1387 ntTSL 2 BASIC16.77■□□□□ 0.27
HOXC11O43248 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HOXC11O43248 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HOXC11O43248 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
HOXC11O43248 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
HOXC11O43248 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC16.76■□□□□ 0.27
HOXC11O43248 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HOXC11O43248 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HOXC11O43248 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
HOXC11O43248 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 63.6 ms