Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CLDN3O15551 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC18.1■□□□□ 0.49
CLDN3O15551 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC18.09■□□□□ 0.49
CLDN3O15551 GPAA1P2-202ENST00000606848 1787 ntBASIC18.09■□□□□ 0.49
CLDN3O15551 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC18.09■□□□□ 0.49
CLDN3O15551 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLDN3O15551 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CLDN3O15551 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CLDN3O15551 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLDN3O15551 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC18.09■□□□□ 0.49
CLDN3O15551 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC18.09■□□□□ 0.49
CLDN3O15551 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC18.09■□□□□ 0.49
CLDN3O15551 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLDN3O15551 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLDN3O15551 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC18.09■□□□□ 0.49
CLDN3O15551 PCDHB19P-201ENST00000570871 2371 ntBASIC18.09■□□□□ 0.49
CLDN3O15551 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC18.09■□□□□ 0.49
CLDN3O15551 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CLDN3O15551 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLDN3O15551 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLDN3O15551 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLDN3O15551 AL592309.1-201ENST00000443127 649 ntBASIC18.09■□□□□ 0.49
CLDN3O15551 URGCP-206ENST00000446958 365 ntTSL 2 BASIC18.09■□□□□ 0.49
CLDN3O15551 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC18.09■□□□□ 0.49
CLDN3O15551 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC18.09■□□□□ 0.49
CLDN3O15551 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC18.09■□□□□ 0.49
CLDN3O15551 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC18.09■□□□□ 0.49
CLDN3O15551 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC18.09■□□□□ 0.49
CLDN3O15551 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC18.09■□□□□ 0.49
CLDN3O15551 METTL23-205ENST00000588302 925 ntTSL 5 BASIC18.09■□□□□ 0.49
CLDN3O15551 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC18.09■□□□□ 0.49
CLDN3O15551 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC18.09■□□□□ 0.49
CLDN3O15551 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLDN3O15551 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC18.09■□□□□ 0.49
CLDN3O15551 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
CLDN3O15551 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC18.09■□□□□ 0.49
CLDN3O15551 GGT4P-201ENST00000623672 1708 ntBASIC18.09■□□□□ 0.49
CLDN3O15551 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLDN3O15551 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLDN3O15551 OS9-205ENST00000413095 1660 ntTSL 2 BASIC18.09■□□□□ 0.49
CLDN3O15551 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLDN3O15551 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLDN3O15551 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLDN3O15551 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLDN3O15551 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CLDN3O15551 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CLDN3O15551 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
CLDN3O15551 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
CLDN3O15551 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.49
CLDN3O15551 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.49
CLDN3O15551 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CLDN3O15551 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.49
CLDN3O15551 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC18.08■□□□□ 0.49
CLDN3O15551 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC18.08■□□□□ 0.49
CLDN3O15551 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
CLDN3O15551 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC18.08■□□□□ 0.49
CLDN3O15551 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC18.08■□□□□ 0.49
CLDN3O15551 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
CLDN3O15551 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC18.08■□□□□ 0.48
CLDN3O15551 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CLDN3O15551 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CLDN3O15551 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC18.08■□□□□ 0.48
CLDN3O15551 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC18.08■□□□□ 0.48
CLDN3O15551 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CLDN3O15551 SPCS2P4-201ENST00000436160 681 ntBASIC18.08■□□□□ 0.48
CLDN3O15551 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC18.08■□□□□ 0.48
CLDN3O15551 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC18.08■□□□□ 0.48
CLDN3O15551 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC18.08■□□□□ 0.48
CLDN3O15551 IGHV3-62-201ENST00000520057 340 ntBASIC18.08■□□□□ 0.48
CLDN3O15551 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
CLDN3O15551 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.48
CLDN3O15551 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.48
CLDN3O15551 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC18.08■□□□□ 0.48
CLDN3O15551 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
CLDN3O15551 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC18.08■□□□□ 0.48
CLDN3O15551 AC020765.3-201ENST00000613051 740 ntBASIC18.08■□□□□ 0.48
CLDN3O15551 CES3-203ENST00000543856 3178 ntTSL 2 BASIC18.08■□□□□ 0.48
CLDN3O15551 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CLDN3O15551 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC18.08■□□□□ 0.48
CLDN3O15551 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CLDN3O15551 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CLDN3O15551 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CLDN3O15551 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
CLDN3O15551 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC18.08■□□□□ 0.48
CLDN3O15551 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CLDN3O15551 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
CLDN3O15551 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
CLDN3O15551 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC18.07■□□□□ 0.48
CLDN3O15551 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CLDN3O15551 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC18.07■□□□□ 0.48
CLDN3O15551 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CLDN3O15551 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CLDN3O15551 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
CLDN3O15551 NARF-206ENST00000457415 1668 ntTSL 5 BASIC18.07■□□□□ 0.48
CLDN3O15551 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CLDN3O15551 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CLDN3O15551 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CLDN3O15551 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC18.07■□□□□ 0.48
CLDN3O15551 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC18.07■□□□□ 0.48
CLDN3O15551 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 56.2 ms