Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC17.21■□□□□ 0.35
AP4E1Q9UPM8 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
AP4E1Q9UPM8 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
AP4E1Q9UPM8 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
AP4E1Q9UPM8 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
AP4E1Q9UPM8 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
AP4E1Q9UPM8 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
AP4E1Q9UPM8 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC17.21■□□□□ 0.35
AP4E1Q9UPM8 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC17.21■□□□□ 0.35
AP4E1Q9UPM8 MIR940-201ENST00000401276 94 ntBASIC17.21■□□□□ 0.35
AP4E1Q9UPM8 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
AP4E1Q9UPM8 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
AP4E1Q9UPM8 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC17.21■□□□□ 0.35
AP4E1Q9UPM8 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
AP4E1Q9UPM8 AC068137.2-201ENST00000605408 478 ntBASIC17.21■□□□□ 0.35
AP4E1Q9UPM8 AC092865.6-201ENST00000642101 219 ntBASIC17.21■□□□□ 0.35
AP4E1Q9UPM8 AC008894.3-201ENST00000624324 3103 ntBASIC17.21■□□□□ 0.35
AP4E1Q9UPM8 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
AP4E1Q9UPM8 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
AP4E1Q9UPM8 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
AP4E1Q9UPM8 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC17.21■□□□□ 0.35
AP4E1Q9UPM8 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
AP4E1Q9UPM8 LINC01144-201ENST00000626198 1710 ntBASIC17.21■□□□□ 0.35
AP4E1Q9UPM8 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
AP4E1Q9UPM8 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC17.21■□□□□ 0.34
AP4E1Q9UPM8 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.34
AP4E1Q9UPM8 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
AP4E1Q9UPM8 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
AP4E1Q9UPM8 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC17.2■□□□□ 0.34
AP4E1Q9UPM8 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
AP4E1Q9UPM8 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC17.2■□□□□ 0.34
AP4E1Q9UPM8 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
AP4E1Q9UPM8 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
AP4E1Q9UPM8 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
AP4E1Q9UPM8 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
AP4E1Q9UPM8 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
AP4E1Q9UPM8 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
AP4E1Q9UPM8 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
AP4E1Q9UPM8 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
AP4E1Q9UPM8 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC17.2■□□□□ 0.34
AP4E1Q9UPM8 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
AP4E1Q9UPM8 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC17.2■□□□□ 0.34
AP4E1Q9UPM8 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC17.2■□□□□ 0.34
AP4E1Q9UPM8 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC17.2■□□□□ 0.34
AP4E1Q9UPM8 AC074386.1-202ENST00000463561 864 ntBASIC17.2■□□□□ 0.34
AP4E1Q9UPM8 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC17.2■□□□□ 0.34
AP4E1Q9UPM8 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC17.2■□□□□ 0.34
AP4E1Q9UPM8 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
AP4E1Q9UPM8 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
AP4E1Q9UPM8 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
AP4E1Q9UPM8 ACE-204ENST00000428043 5120 ntTSL 2 BASIC17.2■□□□□ 0.34
AP4E1Q9UPM8 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
AP4E1Q9UPM8 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
AP4E1Q9UPM8 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC17.2■□□□□ 0.34
AP4E1Q9UPM8 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC17.2■□□□□ 0.34
AP4E1Q9UPM8 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
AP4E1Q9UPM8 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC17.2■□□□□ 0.34
AP4E1Q9UPM8 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
AP4E1Q9UPM8 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC17.2■□□□□ 0.34
AP4E1Q9UPM8 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC17.2■□□□□ 0.34
AP4E1Q9UPM8 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
AP4E1Q9UPM8 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
AP4E1Q9UPM8 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
AP4E1Q9UPM8 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
AP4E1Q9UPM8 REM2-202ENST00000536884 1331 ntTSL 2 BASIC17.2■□□□□ 0.34
AP4E1Q9UPM8 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
AP4E1Q9UPM8 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
AP4E1Q9UPM8 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
AP4E1Q9UPM8 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
AP4E1Q9UPM8 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
AP4E1Q9UPM8 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
AP4E1Q9UPM8 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
AP4E1Q9UPM8 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC17.19■□□□□ 0.34
AP4E1Q9UPM8 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
AP4E1Q9UPM8 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC17.19■□□□□ 0.34
AP4E1Q9UPM8 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC17.19■□□□□ 0.34
AP4E1Q9UPM8 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC17.19■□□□□ 0.34
AP4E1Q9UPM8 FIS1-203ENST00000442303 631 ntTSL 3 BASIC17.19■□□□□ 0.34
AP4E1Q9UPM8 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC17.19■□□□□ 0.34
AP4E1Q9UPM8 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
AP4E1Q9UPM8 KRT18P58-201ENST00000527480 1120 ntBASIC17.19■□□□□ 0.34
AP4E1Q9UPM8 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC17.19■□□□□ 0.34
AP4E1Q9UPM8 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
AP4E1Q9UPM8 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
AP4E1Q9UPM8 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
AP4E1Q9UPM8 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
AP4E1Q9UPM8 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
AP4E1Q9UPM8 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
AP4E1Q9UPM8 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
AP4E1Q9UPM8 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
AP4E1Q9UPM8 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
AP4E1Q9UPM8 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
AP4E1Q9UPM8 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
AP4E1Q9UPM8 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
AP4E1Q9UPM8 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC17.19■□□□□ 0.34
AP4E1Q9UPM8 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
AP4E1Q9UPM8 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
AP4E1Q9UPM8 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
AP4E1Q9UPM8 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
AP4E1Q9UPM8 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms