Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
LIMD1Q9UGP4 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
LIMD1Q9UGP4 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.36
LIMD1Q9UGP4 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
LIMD1Q9UGP4 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LIMD1Q9UGP4 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
LIMD1Q9UGP4 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
LIMD1Q9UGP4 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
LIMD1Q9UGP4 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC17.27■□□□□ 0.35
LIMD1Q9UGP4 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC17.27■□□□□ 0.35
LIMD1Q9UGP4 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
LIMD1Q9UGP4 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC17.27■□□□□ 0.35
LIMD1Q9UGP4 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC17.27■□□□□ 0.35
LIMD1Q9UGP4 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
LIMD1Q9UGP4 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC17.27■□□□□ 0.35
LIMD1Q9UGP4 AC131009.4-201ENST00000624048 1740 ntBASIC17.27■□□□□ 0.35
LIMD1Q9UGP4 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
LIMD1Q9UGP4 LINC00304-203ENST00000565008 1864 ntBASIC17.27■□□□□ 0.35
LIMD1Q9UGP4 AC009053.2-201ENST00000563701 2365 ntBASIC17.26■□□□□ 0.35
LIMD1Q9UGP4 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
LIMD1Q9UGP4 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC17.26■□□□□ 0.35
LIMD1Q9UGP4 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
LIMD1Q9UGP4 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIMD1Q9UGP4 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIMD1Q9UGP4 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC17.26■□□□□ 0.35
LIMD1Q9UGP4 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIMD1Q9UGP4 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC17.26■□□□□ 0.35
LIMD1Q9UGP4 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
LIMD1Q9UGP4 AL645608.8-201ENST00000606034 2086 ntBASIC17.26■□□□□ 0.35
LIMD1Q9UGP4 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIMD1Q9UGP4 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
LIMD1Q9UGP4 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIMD1Q9UGP4 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
LIMD1Q9UGP4 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC17.26■□□□□ 0.35
LIMD1Q9UGP4 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC17.26■□□□□ 0.35
LIMD1Q9UGP4 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC17.26■□□□□ 0.35
LIMD1Q9UGP4 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIMD1Q9UGP4 GNAQP1-201ENST00000444815 1067 ntBASIC17.26■□□□□ 0.35
LIMD1Q9UGP4 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC17.26■□□□□ 0.35
LIMD1Q9UGP4 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC17.26■□□□□ 0.35
LIMD1Q9UGP4 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LIMD1Q9UGP4 RNA5-8SN1-201ENST00000610460 153 ntBASIC17.26■□□□□ 0.35
LIMD1Q9UGP4 RNA5-8SN5-202ENST00000612463 153 ntBASIC17.26■□□□□ 0.35
LIMD1Q9UGP4 RNA5-8SN4-201ENST00000613359 153 ntBASIC17.26■□□□□ 0.35
LIMD1Q9UGP4 TEX28P1-201ENST00000613479 1221 ntBASIC17.26■□□□□ 0.35
LIMD1Q9UGP4 TEX28P2-201ENST00000617764 1221 ntBASIC17.26■□□□□ 0.35
LIMD1Q9UGP4 RNA5-8SN5-201ENST00000619471 153 ntBASIC17.26■□□□□ 0.35
LIMD1Q9UGP4 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LIMD1Q9UGP4 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
LIMD1Q9UGP4 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC17.26■□□□□ 0.35
LIMD1Q9UGP4 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC17.26■□□□□ 0.35
LIMD1Q9UGP4 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC17.26■□□□□ 0.35
LIMD1Q9UGP4 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
LIMD1Q9UGP4 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
LIMD1Q9UGP4 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIMD1Q9UGP4 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIMD1Q9UGP4 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIMD1Q9UGP4 AL035456.1-201ENST00000456064 1369 ntBASIC17.26■□□□□ 0.35
LIMD1Q9UGP4 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIMD1Q9UGP4 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC17.26■□□□□ 0.35
LIMD1Q9UGP4 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIMD1Q9UGP4 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
LIMD1Q9UGP4 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LIMD1Q9UGP4 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC17.25■□□□□ 0.35
LIMD1Q9UGP4 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
LIMD1Q9UGP4 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
LIMD1Q9UGP4 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LIMD1Q9UGP4 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
LIMD1Q9UGP4 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
LIMD1Q9UGP4 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
LIMD1Q9UGP4 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
LIMD1Q9UGP4 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
LIMD1Q9UGP4 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC17.25■□□□□ 0.35
LIMD1Q9UGP4 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LIMD1Q9UGP4 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC17.25■□□□□ 0.35
LIMD1Q9UGP4 AC106820.2-201ENST00000563775 3264 ntBASIC17.25■□□□□ 0.35
LIMD1Q9UGP4 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LIMD1Q9UGP4 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LIMD1Q9UGP4 RPL37AP1-201ENST00000412502 279 ntBASIC17.25■□□□□ 0.35
LIMD1Q9UGP4 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
LIMD1Q9UGP4 RN7SL752P-201ENST00000463779 287 ntBASIC17.25■□□□□ 0.35
LIMD1Q9UGP4 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LIMD1Q9UGP4 KRT18P34-201ENST00000488218 1270 ntBASIC17.25■□□□□ 0.35
LIMD1Q9UGP4 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC17.25■□□□□ 0.35
LIMD1Q9UGP4 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
LIMD1Q9UGP4 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC17.25■□□□□ 0.35
LIMD1Q9UGP4 AC132938.2-201ENST00000579188 680 ntBASIC17.25■□□□□ 0.35
LIMD1Q9UGP4 AL589739.1-201ENST00000607720 493 ntBASIC17.25■□□□□ 0.35
LIMD1Q9UGP4 AL844908.2-201ENST00000609461 460 ntBASIC17.25■□□□□ 0.35
LIMD1Q9UGP4 AL591163.1-201ENST00000641757 987 ntBASIC17.25■□□□□ 0.35
LIMD1Q9UGP4 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
LIMD1Q9UGP4 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
LIMD1Q9UGP4 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LIMD1Q9UGP4 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC17.25■□□□□ 0.35
LIMD1Q9UGP4 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LIMD1Q9UGP4 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
LIMD1Q9UGP4 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
LIMD1Q9UGP4 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
LIMD1Q9UGP4 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
LIMD1Q9UGP4 CETN4P-206ENST00000642099 2168 ntBASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms