Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
USP28Q96RU2 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC18.97■□□□□ 0.63
USP28Q96RU2 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC18.97■□□□□ 0.63
USP28Q96RU2 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
USP28Q96RU2 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC18.97■□□□□ 0.63
USP28Q96RU2 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
USP28Q96RU2 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
USP28Q96RU2 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
USP28Q96RU2 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
USP28Q96RU2 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
USP28Q96RU2 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
USP28Q96RU2 AC012569.1-201ENST00000591191 1524 ntBASIC18.97■□□□□ 0.63
USP28Q96RU2 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
USP28Q96RU2 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
USP28Q96RU2 FAM185BP-201ENST00000443595 716 ntBASIC18.97■□□□□ 0.63
USP28Q96RU2 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
USP28Q96RU2 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC18.97■□□□□ 0.63
USP28Q96RU2 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC18.97■□□□□ 0.63
USP28Q96RU2 PGM5P2-202ENST00000637225 1043 ntBASIC18.97■□□□□ 0.63
USP28Q96RU2 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC18.97■□□□□ 0.63
USP28Q96RU2 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
USP28Q96RU2 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
USP28Q96RU2 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC18.97■□□□□ 0.63
USP28Q96RU2 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
USP28Q96RU2 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
USP28Q96RU2 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC18.97■□□□□ 0.63
USP28Q96RU2 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
USP28Q96RU2 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC18.97■□□□□ 0.63
USP28Q96RU2 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
USP28Q96RU2 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
USP28Q96RU2 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
USP28Q96RU2 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
USP28Q96RU2 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
USP28Q96RU2 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
USP28Q96RU2 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC18.96■□□□□ 0.63
USP28Q96RU2 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
USP28Q96RU2 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC18.96■□□□□ 0.63
USP28Q96RU2 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC18.96■□□□□ 0.63
USP28Q96RU2 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
USP28Q96RU2 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
USP28Q96RU2 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC18.96■□□□□ 0.63
USP28Q96RU2 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
USP28Q96RU2 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC18.96■□□□□ 0.63
USP28Q96RU2 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC18.96■□□□□ 0.63
USP28Q96RU2 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC18.96■□□□□ 0.63
USP28Q96RU2 MIR7706-201ENST00000613747 67 ntBASIC18.96■□□□□ 0.63
USP28Q96RU2 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC18.96■□□□□ 0.63
USP28Q96RU2 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC18.96■□□□□ 0.63
USP28Q96RU2 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
USP28Q96RU2 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
USP28Q96RU2 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
USP28Q96RU2 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC18.96■□□□□ 0.63
USP28Q96RU2 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC18.95■□□□□ 0.62
USP28Q96RU2 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
USP28Q96RU2 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
USP28Q96RU2 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
USP28Q96RU2 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC18.95■□□□□ 0.62
USP28Q96RU2 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC18.95■□□□□ 0.62
USP28Q96RU2 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC18.95■□□□□ 0.62
USP28Q96RU2 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC18.95■□□□□ 0.62
USP28Q96RU2 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
USP28Q96RU2 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
USP28Q96RU2 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC18.95■□□□□ 0.62
USP28Q96RU2 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC18.95■□□□□ 0.62
USP28Q96RU2 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
USP28Q96RU2 STARD13-205ENST00000439831 945 ntTSL 2 BASIC18.95■□□□□ 0.62
USP28Q96RU2 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
USP28Q96RU2 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
USP28Q96RU2 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
USP28Q96RU2 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC18.95■□□□□ 0.62
USP28Q96RU2 AL031008.1-201ENST00000619963 541 ntBASIC18.95■□□□□ 0.62
USP28Q96RU2 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC18.95■□□□□ 0.62
USP28Q96RU2 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
USP28Q96RU2 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
USP28Q96RU2 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
USP28Q96RU2 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
USP28Q96RU2 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
USP28Q96RU2 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC18.95■□□□□ 0.62
USP28Q96RU2 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC18.95■□□□□ 0.62
USP28Q96RU2 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
USP28Q96RU2 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
USP28Q96RU2 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
USP28Q96RU2 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC18.95■□□□□ 0.62
USP28Q96RU2 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC18.95■□□□□ 0.62
USP28Q96RU2 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC18.94■□□□□ 0.62
USP28Q96RU2 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC18.94■□□□□ 0.62
USP28Q96RU2 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC18.94■□□□□ 0.62
USP28Q96RU2 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
USP28Q96RU2 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
USP28Q96RU2 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
USP28Q96RU2 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
USP28Q96RU2 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
USP28Q96RU2 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC18.94■□□□□ 0.62
USP28Q96RU2 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
USP28Q96RU2 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
USP28Q96RU2 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC18.94■□□□□ 0.62
USP28Q96RU2 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC18.94■□□□□ 0.62
USP28Q96RU2 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
USP28Q96RU2 HMGA1P7-201ENST00000406908 502 ntBASIC18.94■□□□□ 0.62
USP28Q96RU2 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms