Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
CHFRQ96EP1 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CHFRQ96EP1 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CHFRQ96EP1 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC16.79■□□□□ 0.28
CHFRQ96EP1 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CHFRQ96EP1 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CHFRQ96EP1 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
CHFRQ96EP1 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CHFRQ96EP1 AC007274.1-201ENST00000439805 662 ntBASIC16.79■□□□□ 0.28
CHFRQ96EP1 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC16.79■□□□□ 0.28
CHFRQ96EP1 GNAQP1-201ENST00000444815 1067 ntBASIC16.79■□□□□ 0.28
CHFRQ96EP1 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC16.79■□□□□ 0.28
CHFRQ96EP1 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
CHFRQ96EP1 SPDYE18-201ENST00000510091 1050 ntBASIC16.79■□□□□ 0.28
CHFRQ96EP1 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC16.79■□□□□ 0.28
CHFRQ96EP1 ZNF890P-202ENST00000530367 1156 ntBASIC16.79■□□□□ 0.28
CHFRQ96EP1 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC16.79■□□□□ 0.28
CHFRQ96EP1 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC16.79■□□□□ 0.28
CHFRQ96EP1 TP53TG3HP-202ENST00000569755 579 ntBASIC16.79■□□□□ 0.28
CHFRQ96EP1 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC16.79■□□□□ 0.28
CHFRQ96EP1 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CHFRQ96EP1 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CHFRQ96EP1 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
CHFRQ96EP1 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC16.79■□□□□ 0.28
CHFRQ96EP1 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
CHFRQ96EP1 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC16.79■□□□□ 0.28
CHFRQ96EP1 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC16.79■□□□□ 0.28
CHFRQ96EP1 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CHFRQ96EP1 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CHFRQ96EP1 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
CHFRQ96EP1 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC16.79■□□□□ 0.28
CHFRQ96EP1 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC16.79■□□□□ 0.28
CHFRQ96EP1 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CHFRQ96EP1 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
CHFRQ96EP1 PRORSD1P-202ENST00000563365 2154 ntBASIC16.78■□□□□ 0.28
CHFRQ96EP1 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
CHFRQ96EP1 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CHFRQ96EP1 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CHFRQ96EP1 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CHFRQ96EP1 OR8S1-201ENST00000310194 1080 ntBASIC16.78■□□□□ 0.28
CHFRQ96EP1 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CHFRQ96EP1 U91328.1-201ENST00000437528 223 ntBASIC16.78■□□□□ 0.28
CHFRQ96EP1 AC093724.1-201ENST00000448659 1027 ntBASIC16.78■□□□□ 0.28
CHFRQ96EP1 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
CHFRQ96EP1 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
CHFRQ96EP1 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CHFRQ96EP1 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC16.78■□□□□ 0.28
CHFRQ96EP1 AC010336.2-201ENST00000564226 506 ntBASIC16.78■□□□□ 0.28
CHFRQ96EP1 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC16.78■□□□□ 0.28
CHFRQ96EP1 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC16.78■□□□□ 0.28
CHFRQ96EP1 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CHFRQ96EP1 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
CHFRQ96EP1 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
CHFRQ96EP1 AC007541.1-201ENST00000570282 1469 ntBASIC16.78■□□□□ 0.28
CHFRQ96EP1 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CHFRQ96EP1 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC16.78■□□□□ 0.28
CHFRQ96EP1 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC16.78■□□□□ 0.28
CHFRQ96EP1 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC16.78■□□□□ 0.28
CHFRQ96EP1 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
CHFRQ96EP1 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CHFRQ96EP1 HR-201ENST00000312841 5351 ntTSL 5 BASIC16.78■□□□□ 0.28
CHFRQ96EP1 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC16.77■□□□□ 0.28
CHFRQ96EP1 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CHFRQ96EP1 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC16.77■□□□□ 0.28
CHFRQ96EP1 AC141586.5-201ENST00000624546 2050 ntBASIC16.77■□□□□ 0.28
CHFRQ96EP1 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC16.77■□□□□ 0.28
CHFRQ96EP1 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC16.77■□□□□ 0.28
CHFRQ96EP1 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CHFRQ96EP1 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
CHFRQ96EP1 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC16.77■□□□□ 0.28
CHFRQ96EP1 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC16.77■□□□□ 0.28
CHFRQ96EP1 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CHFRQ96EP1 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC16.77■□□□□ 0.28
CHFRQ96EP1 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
CHFRQ96EP1 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CHFRQ96EP1 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CHFRQ96EP1 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC16.77■□□□□ 0.28
CHFRQ96EP1 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC16.77■□□□□ 0.28
CHFRQ96EP1 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CHFRQ96EP1 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CHFRQ96EP1 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
CHFRQ96EP1 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CHFRQ96EP1 RBM39-205ENST00000397370 612 ntTSL 2 BASIC16.77■□□□□ 0.28
CHFRQ96EP1 VMO1-203ENST00000416307 712 ntTSL 2 BASIC16.77■□□□□ 0.28
CHFRQ96EP1 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CHFRQ96EP1 NOP2-220ENST00000545915 630 ntTSL 2 BASIC16.77■□□□□ 0.28
CHFRQ96EP1 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC16.77■□□□□ 0.28
CHFRQ96EP1 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC16.77■□□□□ 0.28
CHFRQ96EP1 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC16.77■□□□□ 0.28
CHFRQ96EP1 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC16.77■□□□□ 0.28
CHFRQ96EP1 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC16.77■□□□□ 0.27
CHFRQ96EP1 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
CHFRQ96EP1 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CHFRQ96EP1 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
CHFRQ96EP1 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC16.77■□□□□ 0.27
CHFRQ96EP1 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CHFRQ96EP1 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
CHFRQ96EP1 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
CHFRQ96EP1 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
CHFRQ96EP1 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms