Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 DHX34-201ENST00000328771 4372 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 LINC02560-201ENST00000596379 459 ntBASIC5.16□□□□□ -1.58
SYNE1Q8NF91 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 COX20P2-201ENST00000452636 358 ntBASIC5.16□□□□□ -1.58
SYNE1Q8NF91 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 WASHC2C-210ENST00000623400 4616 ntAPPRIS ALT2 TSL 1 (best) BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 MYH14-201ENST00000262269 3848 ntTSL 5 BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 STK32B-201ENST00000282908 3582 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 KLF4P1-201ENST00000412782 1185 ntBASIC5.16□□□□□ -1.58
SYNE1Q8NF91 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 S100A2-206ENST00000497140 697 ntTSL 2 BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 AC069262.1-201ENST00000539058 672 ntBASIC5.16□□□□□ -1.58
SYNE1Q8NF91 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 AC008677.1-201ENST00000519230 1561 ntBASIC5.16□□□□□ -1.58
SYNE1Q8NF91 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 BX276092.7-203ENST00000637198 1536 ntBASIC5.16□□□□□ -1.58
SYNE1Q8NF91 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 AC008761.3-201ENST00000624803 892 ntBASIC5.16□□□□□ -1.58
SYNE1Q8NF91 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SYNE1Q8NF91 AC080080.1-201ENST00000625121 2420 ntBASIC5.16□□□□□ -1.58
SYNE1Q8NF91 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC5.15□□□□□ -1.58
SYNE1Q8NF91 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
SYNE1Q8NF91 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.58
SYNE1Q8NF91 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC5.15□□□□□ -1.58
SYNE1Q8NF91 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC5.15□□□□□ -1.58
SYNE1Q8NF91 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC5.15□□□□□ -1.58
SYNE1Q8NF91 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC5.15□□□□□ -1.58
SYNE1Q8NF91 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC5.15□□□□□ -1.58
SYNE1Q8NF91 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC5.15□□□□□ -1.58
SYNE1Q8NF91 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC5.15□□□□□ -1.58
SYNE1Q8NF91 LINC01225-203ENST00000563550 1244 ntBASIC5.15□□□□□ -1.58
SYNE1Q8NF91 BSG-214ENST00000614867 960 ntTSL 3 BASIC5.15□□□□□ -1.58
SYNE1Q8NF91 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
SYNE1Q8NF91 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
SYNE1Q8NF91 POR-209ENST00000439269 1858 ntTSL 2 BASIC5.15□□□□□ -1.58
SYNE1Q8NF91 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
SYNE1Q8NF91 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
SYNE1Q8NF91 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
SYNE1Q8NF91 IGSF9-201ENST00000361509 3996 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
SYNE1Q8NF91 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC5.15□□□□□ -1.58
SYNE1Q8NF91 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC5.15□□□□□ -1.58
SYNE1Q8NF91 AC009336.1-201ENST00000608941 1553 ntBASIC5.15□□□□□ -1.58
SYNE1Q8NF91 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
SYNE1Q8NF91 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC5.15□□□□□ -1.58
SYNE1Q8NF91 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
SYNE1Q8NF91 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
SYNE1Q8NF91 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
SYNE1Q8NF91 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC5.15□□□□□ -1.58
SYNE1Q8NF91 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms