Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC54Q8NEL0 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC54Q8NEL0 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC14.53□□□□□ -0.08
CCDC54Q8NEL0 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC54Q8NEL0 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC54Q8NEL0 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC54Q8NEL0 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC14.53□□□□□ -0.08
CCDC54Q8NEL0 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC14.53□□□□□ -0.08
CCDC54Q8NEL0 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
CCDC54Q8NEL0 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.08
CCDC54Q8NEL0 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
CCDC54Q8NEL0 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC14.52□□□□□ -0.08
CCDC54Q8NEL0 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC14.52□□□□□ -0.08
CCDC54Q8NEL0 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
CCDC54Q8NEL0 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
CCDC54Q8NEL0 AL353732.1-201ENST00000569618 1459 ntBASIC14.52□□□□□ -0.08
CCDC54Q8NEL0 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.08
CCDC54Q8NEL0 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC14.52□□□□□ -0.08
CCDC54Q8NEL0 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC14.52□□□□□ -0.08
CCDC54Q8NEL0 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC14.52□□□□□ -0.08
CCDC54Q8NEL0 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
CCDC54Q8NEL0 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CCDC54Q8NEL0 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
CCDC54Q8NEL0 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC14.52□□□□□ -0.09
CCDC54Q8NEL0 LAGE3P1-201ENST00000425356 484 ntBASIC14.52□□□□□ -0.09
CCDC54Q8NEL0 FGFR3P6-201ENST00000457012 610 ntBASIC14.52□□□□□ -0.09
CCDC54Q8NEL0 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CCDC54Q8NEL0 KRT18P31-201ENST00000506277 1292 ntBASIC14.52□□□□□ -0.09
CCDC54Q8NEL0 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC14.52□□□□□ -0.09
CCDC54Q8NEL0 RNF151-202ENST00000569210 853 ntTSL 2 BASIC14.52□□□□□ -0.09
CCDC54Q8NEL0 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CCDC54Q8NEL0 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC14.52□□□□□ -0.09
CCDC54Q8NEL0 MTDHP4-201ENST00000600287 670 ntBASIC14.52□□□□□ -0.09
CCDC54Q8NEL0 AC008608.2-201ENST00000606089 416 ntBASIC14.52□□□□□ -0.09
CCDC54Q8NEL0 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC14.52□□□□□ -0.09
CCDC54Q8NEL0 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC14.52□□□□□ -0.09
CCDC54Q8NEL0 AC093458.2-201ENST00000623150 629 ntBASIC14.52□□□□□ -0.09
CCDC54Q8NEL0 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CCDC54Q8NEL0 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC14.52□□□□□ -0.09
CCDC54Q8NEL0 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
CCDC54Q8NEL0 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC14.52□□□□□ -0.09
CCDC54Q8NEL0 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CCDC54Q8NEL0 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC14.52□□□□□ -0.09
CCDC54Q8NEL0 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC14.52□□□□□ -0.09
CCDC54Q8NEL0 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
CCDC54Q8NEL0 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC14.52□□□□□ -0.09
CCDC54Q8NEL0 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CCDC54Q8NEL0 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CCDC54Q8NEL0 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CCDC54Q8NEL0 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC14.52□□□□□ -0.09
CCDC54Q8NEL0 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC14.52□□□□□ -0.09
CCDC54Q8NEL0 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
CCDC54Q8NEL0 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
CCDC54Q8NEL0 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
CCDC54Q8NEL0 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC14.52□□□□□ -0.09
CCDC54Q8NEL0 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CCDC54Q8NEL0 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CCDC54Q8NEL0 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.09
CCDC54Q8NEL0 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CCDC54Q8NEL0 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC54Q8NEL0 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC14.51□□□□□ -0.09
CCDC54Q8NEL0 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC54Q8NEL0 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC54Q8NEL0 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
CCDC54Q8NEL0 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC54Q8NEL0 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC14.51□□□□□ -0.09
CCDC54Q8NEL0 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC54Q8NEL0 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC54Q8NEL0 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC54Q8NEL0 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC14.51□□□□□ -0.09
CCDC54Q8NEL0 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC54Q8NEL0 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC54Q8NEL0 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC14.51□□□□□ -0.09
CCDC54Q8NEL0 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC54Q8NEL0 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
CCDC54Q8NEL0 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC54Q8NEL0 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC54Q8NEL0 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC54Q8NEL0 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC14.51□□□□□ -0.09
CCDC54Q8NEL0 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC54Q8NEL0 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC54Q8NEL0 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
CCDC54Q8NEL0 LSM5-204ENST00000409909 740 ntTSL 2 BASIC14.51□□□□□ -0.09
CCDC54Q8NEL0 HCG4-201ENST00000418983 998 ntBASIC14.51□□□□□ -0.09
CCDC54Q8NEL0 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC54Q8NEL0 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC14.51□□□□□ -0.09
CCDC54Q8NEL0 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC14.51□□□□□ -0.09
CCDC54Q8NEL0 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC14.51□□□□□ -0.09
CCDC54Q8NEL0 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC14.51□□□□□ -0.09
CCDC54Q8NEL0 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC14.51□□□□□ -0.09
CCDC54Q8NEL0 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC14.51□□□□□ -0.09
CCDC54Q8NEL0 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC14.51□□□□□ -0.09
CCDC54Q8NEL0 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC14.51□□□□□ -0.09
CCDC54Q8NEL0 AC005412.3-201ENST00000580309 715 ntBASIC14.51□□□□□ -0.09
CCDC54Q8NEL0 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC14.51□□□□□ -0.09
CCDC54Q8NEL0 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC14.51□□□□□ -0.09
CCDC54Q8NEL0 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
CCDC54Q8NEL0 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC14.51□□□□□ -0.09
CCDC54Q8NEL0 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
CCDC54Q8NEL0 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC14.51□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 61.1 ms