Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 OARD1-212ENST00000482515 832 ntTSL 2 BASIC19.5■□□□□ 0.71
SMC1BQ8NDV3 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC19.5■□□□□ 0.71
SMC1BQ8NDV3 ACTG1P17-201ENST00000558391 1119 ntBASIC19.5■□□□□ 0.71
SMC1BQ8NDV3 RPL28-207ENST00000558815 616 ntTSL 2 BASIC19.5■□□□□ 0.71
SMC1BQ8NDV3 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC19.5■□□□□ 0.71
SMC1BQ8NDV3 AC026979.3-201ENST00000607315 403 ntBASIC19.5■□□□□ 0.71
SMC1BQ8NDV3 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC19.5■□□□□ 0.71
SMC1BQ8NDV3 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC19.5■□□□□ 0.71
SMC1BQ8NDV3 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
SMC1BQ8NDV3 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SMC1BQ8NDV3 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC19.5■□□□□ 0.71
SMC1BQ8NDV3 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SMC1BQ8NDV3 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC19.5■□□□□ 0.71
SMC1BQ8NDV3 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SMC1BQ8NDV3 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
SMC1BQ8NDV3 AL031598.1-201ENST00000561511 1773 ntBASIC19.49■□□□□ 0.71
SMC1BQ8NDV3 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SMC1BQ8NDV3 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
SMC1BQ8NDV3 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SMC1BQ8NDV3 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SMC1BQ8NDV3 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SMC1BQ8NDV3 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC19.49■□□□□ 0.71
SMC1BQ8NDV3 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SMC1BQ8NDV3 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SMC1BQ8NDV3 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC19.49■□□□□ 0.71
SMC1BQ8NDV3 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SMC1BQ8NDV3 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC19.49■□□□□ 0.71
SMC1BQ8NDV3 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC19.49■□□□□ 0.71
SMC1BQ8NDV3 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC19.49■□□□□ 0.71
SMC1BQ8NDV3 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC19.49■□□□□ 0.71
SMC1BQ8NDV3 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC19.49■□□□□ 0.71
SMC1BQ8NDV3 DUX4L45-201ENST00000566406 1057 ntBASIC19.49■□□□□ 0.71
SMC1BQ8NDV3 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC19.49■□□□□ 0.71
SMC1BQ8NDV3 SPCS2P2-201ENST00000603270 608 ntBASIC19.49■□□□□ 0.71
SMC1BQ8NDV3 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC19.49■□□□□ 0.71
SMC1BQ8NDV3 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
SMC1BQ8NDV3 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC19.49■□□□□ 0.71
SMC1BQ8NDV3 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SMC1BQ8NDV3 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
SMC1BQ8NDV3 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SMC1BQ8NDV3 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SMC1BQ8NDV3 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SMC1BQ8NDV3 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SMC1BQ8NDV3 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SMC1BQ8NDV3 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SMC1BQ8NDV3 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SMC1BQ8NDV3 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SMC1BQ8NDV3 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SMC1BQ8NDV3 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SMC1BQ8NDV3 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC19.49■□□□□ 0.71
SMC1BQ8NDV3 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
SMC1BQ8NDV3 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SMC1BQ8NDV3 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SMC1BQ8NDV3 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
SMC1BQ8NDV3 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
SMC1BQ8NDV3 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC19.48■□□□□ 0.71
SMC1BQ8NDV3 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SMC1BQ8NDV3 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
SMC1BQ8NDV3 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC19.48■□□□□ 0.71
SMC1BQ8NDV3 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
SMC1BQ8NDV3 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
SMC1BQ8NDV3 KRT18P55-202ENST00000578578 1546 ntBASIC19.48■□□□□ 0.71
SMC1BQ8NDV3 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SMC1BQ8NDV3 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC19.48■□□□□ 0.71
SMC1BQ8NDV3 RAD18-204ENST00000418463 563 ntTSL 4 BASIC19.48■□□□□ 0.71
SMC1BQ8NDV3 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC19.48■□□□□ 0.71
SMC1BQ8NDV3 RAD18-205ENST00000421052 582 ntTSL 3 BASIC19.48■□□□□ 0.71
SMC1BQ8NDV3 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC19.48■□□□□ 0.71
SMC1BQ8NDV3 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC19.48■□□□□ 0.71
SMC1BQ8NDV3 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC19.48■□□□□ 0.71
SMC1BQ8NDV3 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC19.48■□□□□ 0.71
SMC1BQ8NDV3 AC074044.1-201ENST00000609673 707 ntBASIC19.48■□□□□ 0.71
SMC1BQ8NDV3 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC19.48■□□□□ 0.71
SMC1BQ8NDV3 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
SMC1BQ8NDV3 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SMC1BQ8NDV3 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SMC1BQ8NDV3 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SMC1BQ8NDV3 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SMC1BQ8NDV3 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
SMC1BQ8NDV3 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
SMC1BQ8NDV3 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC19.48■□□□□ 0.71
SMC1BQ8NDV3 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SMC1BQ8NDV3 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SMC1BQ8NDV3 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SMC1BQ8NDV3 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
SMC1BQ8NDV3 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SMC1BQ8NDV3 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC19.47■□□□□ 0.71
SMC1BQ8NDV3 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC19.47■□□□□ 0.71
SMC1BQ8NDV3 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SMC1BQ8NDV3 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC19.47■□□□□ 0.71
SMC1BQ8NDV3 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SMC1BQ8NDV3 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SMC1BQ8NDV3 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
SMC1BQ8NDV3 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SMC1BQ8NDV3 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
SMC1BQ8NDV3 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SMC1BQ8NDV3 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
SMC1BQ8NDV3 AL442647.2-201ENST00000429864 857 ntBASIC19.47■□□□□ 0.71
SMC1BQ8NDV3 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC19.47■□□□□ 0.71
SMC1BQ8NDV3 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC19.47■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms