Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC18.42■□□□□ 0.54
CCDC65Q8IXS2 NMU-203ENST00000507338 658 ntTSL 3 BASIC18.42■□□□□ 0.54
CCDC65Q8IXS2 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC18.42■□□□□ 0.54
CCDC65Q8IXS2 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC18.42■□□□□ 0.54
CCDC65Q8IXS2 THTPA-204ENST00000554970 569 ntTSL 4 BASIC18.42■□□□□ 0.54
CCDC65Q8IXS2 THTPA-206ENST00000556015 535 ntTSL 3 BASIC18.42■□□□□ 0.54
CCDC65Q8IXS2 KRT19P2-202ENST00000557173 1012 ntBASIC18.42■□□□□ 0.54
CCDC65Q8IXS2 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC18.42■□□□□ 0.54
CCDC65Q8IXS2 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
CCDC65Q8IXS2 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC18.42■□□□□ 0.54
CCDC65Q8IXS2 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC65Q8IXS2 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC65Q8IXS2 STK24-203ENST00000397517 4578 ntTSL 2 BASIC18.42■□□□□ 0.54
CCDC65Q8IXS2 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
CCDC65Q8IXS2 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC65Q8IXS2 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC18.42■□□□□ 0.54
CCDC65Q8IXS2 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC18.42■□□□□ 0.54
CCDC65Q8IXS2 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC65Q8IXS2 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC18.42■□□□□ 0.54
CCDC65Q8IXS2 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC18.42■□□□□ 0.54
CCDC65Q8IXS2 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC18.42■□□□□ 0.54
CCDC65Q8IXS2 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
CCDC65Q8IXS2 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC65Q8IXS2 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC18.41■□□□□ 0.54
CCDC65Q8IXS2 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC18.41■□□□□ 0.54
CCDC65Q8IXS2 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC65Q8IXS2 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC65Q8IXS2 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC18.41■□□□□ 0.54
CCDC65Q8IXS2 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC18.41■□□□□ 0.54
CCDC65Q8IXS2 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC18.41■□□□□ 0.54
CCDC65Q8IXS2 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
CCDC65Q8IXS2 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC65Q8IXS2 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC65Q8IXS2 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
CCDC65Q8IXS2 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
CCDC65Q8IXS2 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC18.41■□□□□ 0.54
CCDC65Q8IXS2 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC65Q8IXS2 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC65Q8IXS2 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
CCDC65Q8IXS2 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC65Q8IXS2 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
CCDC65Q8IXS2 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC18.41■□□□□ 0.54
CCDC65Q8IXS2 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC65Q8IXS2 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC18.41■□□□□ 0.54
CCDC65Q8IXS2 MED15P5-201ENST00000423150 992 ntBASIC18.41■□□□□ 0.54
CCDC65Q8IXS2 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC65Q8IXS2 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC18.41■□□□□ 0.54
CCDC65Q8IXS2 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC18.41■□□□□ 0.54
CCDC65Q8IXS2 KRT18P3-201ENST00000451602 1288 ntBASIC18.41■□□□□ 0.54
CCDC65Q8IXS2 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC18.41■□□□□ 0.54
CCDC65Q8IXS2 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
CCDC65Q8IXS2 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC18.41■□□□□ 0.54
CCDC65Q8IXS2 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC18.41■□□□□ 0.54
CCDC65Q8IXS2 AC140113.2-201ENST00000604370 208 ntBASIC18.41■□□□□ 0.54
CCDC65Q8IXS2 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC65Q8IXS2 FAM197Y3-203ENST00000618346 717 ntBASIC18.41■□□□□ 0.54
CCDC65Q8IXS2 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC65Q8IXS2 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
CCDC65Q8IXS2 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC65Q8IXS2 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC65Q8IXS2 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC65Q8IXS2 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC65Q8IXS2 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC65Q8IXS2 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC65Q8IXS2 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC65Q8IXS2 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC18.41■□□□□ 0.54
CCDC65Q8IXS2 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC65Q8IXS2 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC65Q8IXS2 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC65Q8IXS2 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC65Q8IXS2 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
CCDC65Q8IXS2 AC092364.2-201ENST00000596710 2692 ntBASIC18.4■□□□□ 0.54
CCDC65Q8IXS2 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC65Q8IXS2 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC65Q8IXS2 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC18.4■□□□□ 0.54
CCDC65Q8IXS2 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC65Q8IXS2 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC65Q8IXS2 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC65Q8IXS2 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC65Q8IXS2 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC65Q8IXS2 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC18.4■□□□□ 0.54
CCDC65Q8IXS2 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC65Q8IXS2 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
CCDC65Q8IXS2 FIS1-203ENST00000442303 631 ntTSL 3 BASIC18.4■□□□□ 0.54
CCDC65Q8IXS2 POU5F1P6-201ENST00000466990 990 ntBASIC18.4■□□□□ 0.54
CCDC65Q8IXS2 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC18.4■□□□□ 0.54
CCDC65Q8IXS2 SMN2-210ENST00000511812 867 ntTSL 2 BASIC18.4■□□□□ 0.54
CCDC65Q8IXS2 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC18.4■□□□□ 0.54
CCDC65Q8IXS2 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC18.4■□□□□ 0.54
CCDC65Q8IXS2 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC65Q8IXS2 AC109635.5-201ENST00000533593 962 ntBASIC18.4■□□□□ 0.54
CCDC65Q8IXS2 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC18.4■□□□□ 0.54
CCDC65Q8IXS2 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC18.4■□□□□ 0.54
CCDC65Q8IXS2 AL009183.1-201ENST00000603760 355 ntBASIC18.4■□□□□ 0.54
CCDC65Q8IXS2 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC18.4■□□□□ 0.54
CCDC65Q8IXS2 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC65Q8IXS2 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC18.4■□□□□ 0.54
CCDC65Q8IXS2 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC65Q8IXS2 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC65Q8IXS2 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms