Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC11.36□□□□□ -0.59
CSMD3Q7Z407 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
CSMD3Q7Z407 AL021920.2-201ENST00000624828 1351 ntBASIC11.36□□□□□ -0.59
CSMD3Q7Z407 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
CSMD3Q7Z407 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
CSMD3Q7Z407 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC11.36□□□□□ -0.59
CSMD3Q7Z407 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
CSMD3Q7Z407 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
CSMD3Q7Z407 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC11.35□□□□□ -0.59
CSMD3Q7Z407 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC11.35□□□□□ -0.59
CSMD3Q7Z407 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC11.35□□□□□ -0.59
CSMD3Q7Z407 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
CSMD3Q7Z407 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC11.35□□□□□ -0.59
CSMD3Q7Z407 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC11.35□□□□□ -0.59
CSMD3Q7Z407 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC11.35□□□□□ -0.59
CSMD3Q7Z407 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC11.35□□□□□ -0.59
CSMD3Q7Z407 APRT-204ENST00000563655 709 ntTSL 5 BASIC11.35□□□□□ -0.59
CSMD3Q7Z407 AC233724.13-201ENST00000598383 410 ntBASIC11.35□□□□□ -0.59
CSMD3Q7Z407 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC11.35□□□□□ -0.59
CSMD3Q7Z407 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
CSMD3Q7Z407 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC11.35□□□□□ -0.59
CSMD3Q7Z407 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
CSMD3Q7Z407 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC11.35□□□□□ -0.59
CSMD3Q7Z407 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
CSMD3Q7Z407 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC11.35□□□□□ -0.59
CSMD3Q7Z407 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC11.35□□□□□ -0.59
CSMD3Q7Z407 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC11.35□□□□□ -0.59
CSMD3Q7Z407 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
CSMD3Q7Z407 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
CSMD3Q7Z407 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
CSMD3Q7Z407 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC11.35□□□□□ -0.59
CSMD3Q7Z407 AC007969.1-201ENST00000433675 447 ntBASIC11.35□□□□□ -0.59
CSMD3Q7Z407 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
CSMD3Q7Z407 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC11.35□□□□□ -0.59
CSMD3Q7Z407 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC11.35□□□□□ -0.59
CSMD3Q7Z407 AC021097.1-201ENST00000607902 574 ntBASIC11.35□□□□□ -0.59
CSMD3Q7Z407 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
CSMD3Q7Z407 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC11.35□□□□□ -0.59
CSMD3Q7Z407 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC11.35□□□□□ -0.59
CSMD3Q7Z407 IMPDH1P4-201ENST00000445028 1534 ntBASIC11.35□□□□□ -0.59
CSMD3Q7Z407 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC11.35□□□□□ -0.59
CSMD3Q7Z407 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC11.35□□□□□ -0.59
CSMD3Q7Z407 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
CSMD3Q7Z407 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC11.35□□□□□ -0.59
CSMD3Q7Z407 AL645728.1-201ENST00000366221 2101 ntBASIC11.35□□□□□ -0.59
CSMD3Q7Z407 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC11.35□□□□□ -0.59
CSMD3Q7Z407 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC11.35□□□□□ -0.59
CSMD3Q7Z407 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC11.35□□□□□ -0.59
CSMD3Q7Z407 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
CSMD3Q7Z407 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC11.35□□□□□ -0.59
CSMD3Q7Z407 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC11.35□□□□□ -0.59
CSMD3Q7Z407 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC11.35□□□□□ -0.59
CSMD3Q7Z407 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
CSMD3Q7Z407 GZMB-202ENST00000382540 816 ntTSL 5 BASIC11.35□□□□□ -0.59
CSMD3Q7Z407 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC11.35□□□□□ -0.59
CSMD3Q7Z407 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC11.35□□□□□ -0.59
CSMD3Q7Z407 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
CSMD3Q7Z407 HIST3H2BA-201ENST00000436555 524 ntBASIC11.35□□□□□ -0.59
CSMD3Q7Z407 AC006033.1-201ENST00000440505 426 ntBASIC11.35□□□□□ -0.59
CSMD3Q7Z407 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC11.35□□□□□ -0.59
CSMD3Q7Z407 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
CSMD3Q7Z407 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
CSMD3Q7Z407 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC11.35□□□□□ -0.59
CSMD3Q7Z407 FHL2-212ENST00000607522 759 ntTSL 2 BASIC11.35□□□□□ -0.59
CSMD3Q7Z407 AC004461.2-201ENST00000629517 803 ntBASIC11.35□□□□□ -0.59
CSMD3Q7Z407 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC11.35□□□□□ -0.59
CSMD3Q7Z407 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
CSMD3Q7Z407 AC135050.7-201ENST00000624508 2218 ntBASIC11.34□□□□□ -0.59
CSMD3Q7Z407 AL031731.1-201ENST00000642131 2094 ntBASIC11.34□□□□□ -0.59
CSMD3Q7Z407 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
CSMD3Q7Z407 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
CSMD3Q7Z407 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC11.34□□□□□ -0.59
CSMD3Q7Z407 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC11.34□□□□□ -0.59
CSMD3Q7Z407 COG4-212ENST00000564653 590 ntTSL 5 BASIC11.34□□□□□ -0.59
CSMD3Q7Z407 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC11.34□□□□□ -0.59
CSMD3Q7Z407 MIR4722-201ENST00000578292 60 ntBASIC11.34□□□□□ -0.59
CSMD3Q7Z407 AC020765.3-201ENST00000613051 740 ntBASIC11.34□□□□□ -0.59
CSMD3Q7Z407 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC11.34□□□□□ -0.59
CSMD3Q7Z407 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
CSMD3Q7Z407 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC11.34□□□□□ -0.59
CSMD3Q7Z407 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
CSMD3Q7Z407 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC11.34□□□□□ -0.59
CSMD3Q7Z407 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
CSMD3Q7Z407 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC11.34□□□□□ -0.59
CSMD3Q7Z407 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
CSMD3Q7Z407 STX1A-203ENST00000395155 783 ntTSL 2 BASIC11.34□□□□□ -0.59
CSMD3Q7Z407 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC11.34□□□□□ -0.59
CSMD3Q7Z407 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
CSMD3Q7Z407 GOLGA2P4-201ENST00000441462 777 ntBASIC11.34□□□□□ -0.59
CSMD3Q7Z407 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC11.34□□□□□ -0.59
CSMD3Q7Z407 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC11.34□□□□□ -0.59
CSMD3Q7Z407 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC11.34□□□□□ -0.59
CSMD3Q7Z407 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC11.34□□□□□ -0.59
CSMD3Q7Z407 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC11.34□□□□□ -0.59
CSMD3Q7Z407 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC11.34□□□□□ -0.59
CSMD3Q7Z407 GNRHR2-203ENST00000581100 1187 ntBASIC11.34□□□□□ -0.59
CSMD3Q7Z407 MIR3615-201ENST00000581999 87 ntBASIC11.34□□□□□ -0.59
CSMD3Q7Z407 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC11.34□□□□□ -0.59
CSMD3Q7Z407 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
CSMD3Q7Z407 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms