Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
VPS53Q5VIR6 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC20.01■□□□□ 0.79
VPS53Q5VIR6 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC20.01■□□□□ 0.79
VPS53Q5VIR6 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
VPS53Q5VIR6 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
VPS53Q5VIR6 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC20.01■□□□□ 0.79
VPS53Q5VIR6 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC20.01■□□□□ 0.79
VPS53Q5VIR6 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
VPS53Q5VIR6 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
VPS53Q5VIR6 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC20■□□□□ 0.79
VPS53Q5VIR6 FER1L4-210ENST00000615531 5998 ntBASIC20■□□□□ 0.79
VPS53Q5VIR6 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC20■□□□□ 0.79
VPS53Q5VIR6 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
VPS53Q5VIR6 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
VPS53Q5VIR6 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
VPS53Q5VIR6 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC20■□□□□ 0.79
VPS53Q5VIR6 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC20■□□□□ 0.79
VPS53Q5VIR6 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
VPS53Q5VIR6 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
VPS53Q5VIR6 CDK2AP2P3-201ENST00000422476 372 ntBASIC20■□□□□ 0.79
VPS53Q5VIR6 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC20■□□□□ 0.79
VPS53Q5VIR6 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC20■□□□□ 0.79
VPS53Q5VIR6 AC140658.5-201ENST00000438532 169 ntBASIC20■□□□□ 0.79
VPS53Q5VIR6 FIS1-203ENST00000442303 631 ntTSL 3 BASIC20■□□□□ 0.79
VPS53Q5VIR6 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC20■□□□□ 0.79
VPS53Q5VIR6 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC20■□□□□ 0.79
VPS53Q5VIR6 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC20■□□□□ 0.79
VPS53Q5VIR6 THTPA-204ENST00000554970 569 ntTSL 4 BASIC20■□□□□ 0.79
VPS53Q5VIR6 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC20■□□□□ 0.79
VPS53Q5VIR6 THTPA-206ENST00000556015 535 ntTSL 3 BASIC20■□□□□ 0.79
VPS53Q5VIR6 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
VPS53Q5VIR6 AC068137.2-201ENST00000605408 478 ntBASIC20■□□□□ 0.79
VPS53Q5VIR6 AL078644.1-201ENST00000609881 752 ntBASIC20■□□□□ 0.79
VPS53Q5VIR6 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC20■□□□□ 0.79
VPS53Q5VIR6 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
VPS53Q5VIR6 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
VPS53Q5VIR6 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
VPS53Q5VIR6 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC20■□□□□ 0.79
VPS53Q5VIR6 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC20■□□□□ 0.79
VPS53Q5VIR6 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC20■□□□□ 0.79
VPS53Q5VIR6 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC20■□□□□ 0.79
VPS53Q5VIR6 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
VPS53Q5VIR6 KRT8P39-201ENST00000396270 1433 ntBASIC20■□□□□ 0.79
VPS53Q5VIR6 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
VPS53Q5VIR6 DOC2GP-204ENST00000639052 2548 ntBASIC20■□□□□ 0.79
VPS53Q5VIR6 REM2-202ENST00000536884 1331 ntTSL 2 BASIC20■□□□□ 0.79
VPS53Q5VIR6 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
VPS53Q5VIR6 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC19.99■□□□□ 0.79
VPS53Q5VIR6 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
VPS53Q5VIR6 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
VPS53Q5VIR6 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC19.99■□□□□ 0.79
VPS53Q5VIR6 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
VPS53Q5VIR6 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
VPS53Q5VIR6 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
VPS53Q5VIR6 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
VPS53Q5VIR6 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC19.99■□□□□ 0.79
VPS53Q5VIR6 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
VPS53Q5VIR6 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
VPS53Q5VIR6 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
VPS53Q5VIR6 NMU-203ENST00000507338 658 ntTSL 3 BASIC19.99■□□□□ 0.79
VPS53Q5VIR6 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC19.99■□□□□ 0.79
VPS53Q5VIR6 AL031055.1-201ENST00000606362 631 ntBASIC19.99■□□□□ 0.79
VPS53Q5VIR6 AP001350.2-201ENST00000625104 1094 ntBASIC19.99■□□□□ 0.79
VPS53Q5VIR6 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
VPS53Q5VIR6 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
VPS53Q5VIR6 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
VPS53Q5VIR6 FLJ16779-201ENST00000612722 7638 ntBASIC19.99■□□□□ 0.79
VPS53Q5VIR6 AC018695.7-201ENST00000624587 2492 ntBASIC19.99■□□□□ 0.79
VPS53Q5VIR6 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
VPS53Q5VIR6 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC19.99■□□□□ 0.79
VPS53Q5VIR6 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
VPS53Q5VIR6 CES3-203ENST00000543856 3178 ntTSL 2 BASIC19.99■□□□□ 0.79
VPS53Q5VIR6 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
VPS53Q5VIR6 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC19.98■□□□□ 0.79
VPS53Q5VIR6 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC19.98■□□□□ 0.79
VPS53Q5VIR6 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
VPS53Q5VIR6 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
VPS53Q5VIR6 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC19.98■□□□□ 0.79
VPS53Q5VIR6 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
VPS53Q5VIR6 AL031731.1-201ENST00000642131 2094 ntBASIC19.98■□□□□ 0.79
VPS53Q5VIR6 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
VPS53Q5VIR6 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC19.98■□□□□ 0.79
VPS53Q5VIR6 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
VPS53Q5VIR6 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC19.98■□□□□ 0.79
VPS53Q5VIR6 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
VPS53Q5VIR6 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
VPS53Q5VIR6 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
VPS53Q5VIR6 BX842568.4-201ENST00000421222 227 ntBASIC19.98■□□□□ 0.79
VPS53Q5VIR6 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC19.98■□□□□ 0.79
VPS53Q5VIR6 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC19.98■□□□□ 0.79
VPS53Q5VIR6 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC19.98■□□□□ 0.79
VPS53Q5VIR6 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
VPS53Q5VIR6 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC19.98■□□□□ 0.79
VPS53Q5VIR6 AC010327.4-202ENST00000591484 748 ntBASIC19.98■□□□□ 0.79
VPS53Q5VIR6 AL009183.1-201ENST00000603760 355 ntBASIC19.98■□□□□ 0.79
VPS53Q5VIR6 AC099522.2-201ENST00000607001 744 ntBASIC19.98■□□□□ 0.79
VPS53Q5VIR6 AC091812.2-201ENST00000619081 385 ntBASIC19.98■□□□□ 0.79
VPS53Q5VIR6 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
VPS53Q5VIR6 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
VPS53Q5VIR6 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC19.98■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 53.9 ms