Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC20.59■□□□□ 0.89
RC3H1Q5TC82 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
RC3H1Q5TC82 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
RC3H1Q5TC82 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
RC3H1Q5TC82 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
RC3H1Q5TC82 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
RC3H1Q5TC82 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
RC3H1Q5TC82 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC20.59■□□□□ 0.89
RC3H1Q5TC82 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC20.59■□□□□ 0.89
RC3H1Q5TC82 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
RC3H1Q5TC82 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RC3H1Q5TC82 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
RC3H1Q5TC82 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RC3H1Q5TC82 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RC3H1Q5TC82 STX1A-203ENST00000395155 783 ntTSL 2 BASIC20.59■□□□□ 0.89
RC3H1Q5TC82 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC20.59■□□□□ 0.89
RC3H1Q5TC82 SLC25A47P1-201ENST00000531577 414 ntBASIC20.59■□□□□ 0.89
RC3H1Q5TC82 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC20.59■□□□□ 0.89
RC3H1Q5TC82 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC20.59■□□□□ 0.89
RC3H1Q5TC82 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC20.59■□□□□ 0.89
RC3H1Q5TC82 AL365330.1-201ENST00000607459 531 ntBASIC20.59■□□□□ 0.89
RC3H1Q5TC82 SNX12-206ENST00000622259 661 ntTSL 5 BASIC20.59■□□□□ 0.89
RC3H1Q5TC82 ABBA01031660.1-201ENST00000635219 756 ntBASIC20.59■□□□□ 0.89
RC3H1Q5TC82 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
RC3H1Q5TC82 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC20.59■□□□□ 0.89
RC3H1Q5TC82 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
RC3H1Q5TC82 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
RC3H1Q5TC82 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RC3H1Q5TC82 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
RC3H1Q5TC82 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
RC3H1Q5TC82 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC20.59■□□□□ 0.89
RC3H1Q5TC82 AC018665.1-201ENST00000622927 1362 ntBASIC20.59■□□□□ 0.89
RC3H1Q5TC82 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RC3H1Q5TC82 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.89
RC3H1Q5TC82 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
RC3H1Q5TC82 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
RC3H1Q5TC82 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.89
RC3H1Q5TC82 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
RC3H1Q5TC82 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
RC3H1Q5TC82 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC20.58■□□□□ 0.89
RC3H1Q5TC82 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
RC3H1Q5TC82 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
RC3H1Q5TC82 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC20.58■□□□□ 0.89
RC3H1Q5TC82 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
RC3H1Q5TC82 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
RC3H1Q5TC82 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC20.58■□□□□ 0.89
RC3H1Q5TC82 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
RC3H1Q5TC82 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
RC3H1Q5TC82 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC20.58■□□□□ 0.89
RC3H1Q5TC82 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC20.58■□□□□ 0.89
RC3H1Q5TC82 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC20.58■□□□□ 0.89
RC3H1Q5TC82 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
RC3H1Q5TC82 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
RC3H1Q5TC82 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC20.58■□□□□ 0.89
RC3H1Q5TC82 AL442647.2-201ENST00000429864 857 ntBASIC20.58■□□□□ 0.89
RC3H1Q5TC82 ACTG1P3-201ENST00000431775 1114 ntBASIC20.58■□□□□ 0.89
RC3H1Q5TC82 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC20.58■□□□□ 0.89
RC3H1Q5TC82 FXR1-221ENST00000491674 365 ntTSL 2 BASIC20.58■□□□□ 0.89
RC3H1Q5TC82 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC20.58■□□□□ 0.89
RC3H1Q5TC82 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC20.58■□□□□ 0.89
RC3H1Q5TC82 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
RC3H1Q5TC82 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC20.58■□□□□ 0.89
RC3H1Q5TC82 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC20.58■□□□□ 0.89
RC3H1Q5TC82 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
RC3H1Q5TC82 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
RC3H1Q5TC82 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC20.58■□□□□ 0.88
RC3H1Q5TC82 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
RC3H1Q5TC82 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
RC3H1Q5TC82 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
RC3H1Q5TC82 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC20.58■□□□□ 0.88
RC3H1Q5TC82 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
RC3H1Q5TC82 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
RC3H1Q5TC82 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
RC3H1Q5TC82 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC20.58■□□□□ 0.88
RC3H1Q5TC82 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC20.57■□□□□ 0.88
RC3H1Q5TC82 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
RC3H1Q5TC82 CD276-203ENST00000537340 2439 ntTSL 2 BASIC20.57■□□□□ 0.88
RC3H1Q5TC82 AC093525.8-201ENST00000624099 1342 ntBASIC20.57■□□□□ 0.88
RC3H1Q5TC82 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RC3H1Q5TC82 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RC3H1Q5TC82 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RC3H1Q5TC82 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
RC3H1Q5TC82 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
RC3H1Q5TC82 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RC3H1Q5TC82 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
RC3H1Q5TC82 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RC3H1Q5TC82 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
RC3H1Q5TC82 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
RC3H1Q5TC82 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RC3H1Q5TC82 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC20.57■□□□□ 0.88
RC3H1Q5TC82 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC20.57■□□□□ 0.88
RC3H1Q5TC82 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC20.57■□□□□ 0.88
RC3H1Q5TC82 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RC3H1Q5TC82 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
RC3H1Q5TC82 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
RC3H1Q5TC82 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC20.57■□□□□ 0.88
RC3H1Q5TC82 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
RC3H1Q5TC82 RPS24-214ENST00000613865 538 ntTSL 5 BASIC20.57■□□□□ 0.88
RC3H1Q5TC82 MIR6869-201ENST00000619434 62 ntBASIC20.57■□□□□ 0.88
RC3H1Q5TC82 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms