Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 DUSP5P1-201ENST00000441325 1139 ntBASIC19.21■□□□□ 0.67
SF3A1Q15459 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC19.21■□□□□ 0.67
SF3A1Q15459 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
SF3A1Q15459 AC073648.2-201ENST00000510116 352 ntBASIC19.21■□□□□ 0.67
SF3A1Q15459 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC19.21■□□□□ 0.67
SF3A1Q15459 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SF3A1Q15459 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SF3A1Q15459 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SF3A1Q15459 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC19.21■□□□□ 0.67
SF3A1Q15459 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC19.21■□□□□ 0.67
SF3A1Q15459 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC19.21■□□□□ 0.67
SF3A1Q15459 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
SF3A1Q15459 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SF3A1Q15459 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SF3A1Q15459 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC19.21■□□□□ 0.67
SF3A1Q15459 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SF3A1Q15459 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SF3A1Q15459 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
SF3A1Q15459 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SF3A1Q15459 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC19.2■□□□□ 0.66
SF3A1Q15459 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC19.2■□□□□ 0.66
SF3A1Q15459 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SF3A1Q15459 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SF3A1Q15459 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC19.2■□□□□ 0.66
SF3A1Q15459 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SF3A1Q15459 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
SF3A1Q15459 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC19.2■□□□□ 0.66
SF3A1Q15459 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC19.2■□□□□ 0.66
SF3A1Q15459 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SF3A1Q15459 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
SF3A1Q15459 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SF3A1Q15459 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC19.2■□□□□ 0.66
SF3A1Q15459 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SF3A1Q15459 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SF3A1Q15459 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC19.2■□□□□ 0.66
SF3A1Q15459 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC19.2■□□□□ 0.66
SF3A1Q15459 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC19.2■□□□□ 0.66
SF3A1Q15459 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC19.2■□□□□ 0.66
SF3A1Q15459 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC19.2■□□□□ 0.66
SF3A1Q15459 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC19.2■□□□□ 0.66
SF3A1Q15459 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC19.2■□□□□ 0.66
SF3A1Q15459 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SF3A1Q15459 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
SF3A1Q15459 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC19.2■□□□□ 0.66
SF3A1Q15459 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC19.2■□□□□ 0.66
SF3A1Q15459 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC19.2■□□□□ 0.66
SF3A1Q15459 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SF3A1Q15459 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC19.2■□□□□ 0.66
SF3A1Q15459 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
SF3A1Q15459 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SF3A1Q15459 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
SF3A1Q15459 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SF3A1Q15459 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SF3A1Q15459 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SF3A1Q15459 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
SF3A1Q15459 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
SF3A1Q15459 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SF3A1Q15459 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SF3A1Q15459 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SF3A1Q15459 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SF3A1Q15459 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SF3A1Q15459 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SF3A1Q15459 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
SF3A1Q15459 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SF3A1Q15459 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC19.19■□□□□ 0.66
SF3A1Q15459 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
SF3A1Q15459 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SF3A1Q15459 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SF3A1Q15459 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC19.19■□□□□ 0.66
SF3A1Q15459 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SF3A1Q15459 FAM197Y8-203ENST00000450145 560 ntBASIC19.19■□□□□ 0.66
SF3A1Q15459 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC19.19■□□□□ 0.66
SF3A1Q15459 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC19.19■□□□□ 0.66
SF3A1Q15459 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC19.19■□□□□ 0.66
SF3A1Q15459 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC19.19■□□□□ 0.66
SF3A1Q15459 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC19.19■□□□□ 0.66
SF3A1Q15459 AC107918.2-201ENST00000530817 355 ntBASIC19.19■□□□□ 0.66
SF3A1Q15459 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC19.19■□□□□ 0.66
SF3A1Q15459 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC19.19■□□□□ 0.66
SF3A1Q15459 SLC22A20-204ENST00000530038 1673 ntBASIC19.19■□□□□ 0.66
SF3A1Q15459 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SF3A1Q15459 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SF3A1Q15459 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC19.19■□□□□ 0.66
SF3A1Q15459 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SF3A1Q15459 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SF3A1Q15459 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC19.19■□□□□ 0.66
SF3A1Q15459 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SF3A1Q15459 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SF3A1Q15459 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SF3A1Q15459 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
SF3A1Q15459 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
SF3A1Q15459 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC19.18■□□□□ 0.66
SF3A1Q15459 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
SF3A1Q15459 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
SF3A1Q15459 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
SF3A1Q15459 AC131009.4-201ENST00000624048 1740 ntBASIC19.18■□□□□ 0.66
SF3A1Q15459 AL512652.2-201ENST00000625156 1716 ntBASIC19.18■□□□□ 0.66
SF3A1Q15459 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC19.18■□□□□ 0.66
SF3A1Q15459 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC19.18■□□□□ 0.66
SF3A1Q15459 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms