Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 SNX33P1-201ENST00000592116 1762 ntBASIC14.85□□□□□ -0.03
CLRN1P58418 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
CLRN1P58418 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CLRN1P58418 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC14.85□□□□□ -0.03
CLRN1P58418 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC14.85□□□□□ -0.03
CLRN1P58418 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
CLRN1P58418 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC14.85□□□□□ -0.03
CLRN1P58418 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC14.85□□□□□ -0.03
CLRN1P58418 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
CLRN1P58418 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CLRN1P58418 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
CLRN1P58418 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
CLRN1P58418 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CLRN1P58418 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
CLRN1P58418 VN2R19P-201ENST00000442399 1052 ntBASIC14.85□□□□□ -0.03
CLRN1P58418 FAM185BP-201ENST00000443595 716 ntBASIC14.85□□□□□ -0.03
CLRN1P58418 AC009947.1-201ENST00000444350 727 ntBASIC14.85□□□□□ -0.03
CLRN1P58418 AL513480.1-201ENST00000451731 511 ntBASIC14.85□□□□□ -0.03
CLRN1P58418 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
CLRN1P58418 RNA5SP419-201ENST00000515908 135 ntBASIC14.85□□□□□ -0.03
CLRN1P58418 MMP17-203ENST00000535004 719 ntTSL 3 BASIC14.85□□□□□ -0.03
CLRN1P58418 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC14.85□□□□□ -0.03
CLRN1P58418 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC14.85□□□□□ -0.03
CLRN1P58418 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC14.85□□□□□ -0.03
CLRN1P58418 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CLRN1P58418 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC14.85□□□□□ -0.03
CLRN1P58418 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
CLRN1P58418 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
CLRN1P58418 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CLRN1P58418 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CLRN1P58418 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CLRN1P58418 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CLRN1P58418 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CLRN1P58418 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC14.85□□□□□ -0.03
CLRN1P58418 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CLRN1P58418 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC14.85□□□□□ -0.03
CLRN1P58418 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CLRN1P58418 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
CLRN1P58418 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CLRN1P58418 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC14.84□□□□□ -0.03
CLRN1P58418 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
CLRN1P58418 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC14.84□□□□□ -0.03
CLRN1P58418 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CLRN1P58418 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
CLRN1P58418 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CLRN1P58418 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CLRN1P58418 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CLRN1P58418 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
CLRN1P58418 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CLRN1P58418 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CLRN1P58418 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CLRN1P58418 AL512652.2-201ENST00000625156 1716 ntBASIC14.84□□□□□ -0.03
CLRN1P58418 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
CLRN1P58418 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CLRN1P58418 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CLRN1P58418 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CLRN1P58418 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC14.84□□□□□ -0.03
CLRN1P58418 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC14.84□□□□□ -0.03
CLRN1P58418 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CLRN1P58418 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
CLRN1P58418 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CLRN1P58418 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CLRN1P58418 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
CLRN1P58418 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CLRN1P58418 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC14.84□□□□□ -0.03
CLRN1P58418 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
CLRN1P58418 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
CLRN1P58418 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC14.84□□□□□ -0.03
CLRN1P58418 IGHV3-22-201ENST00000520721 359 ntBASIC14.84□□□□□ -0.03
CLRN1P58418 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC14.84□□□□□ -0.03
CLRN1P58418 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC14.84□□□□□ -0.03
CLRN1P58418 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC14.84□□□□□ -0.03
CLRN1P58418 AL662844.4-201ENST00000606367 2838 ntBASIC14.84□□□□□ -0.03
CLRN1P58418 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CLRN1P58418 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC14.84□□□□□ -0.03
CLRN1P58418 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
CLRN1P58418 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC14.84□□□□□ -0.03
CLRN1P58418 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CLRN1P58418 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CLRN1P58418 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CLRN1P58418 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CLRN1P58418 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
CLRN1P58418 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CLRN1P58418 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC14.84□□□□□ -0.03
CLRN1P58418 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CLRN1P58418 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CLRN1P58418 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CLRN1P58418 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CLRN1P58418 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC14.84□□□□□ -0.03
CLRN1P58418 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
CLRN1P58418 GGT3P-204ENST00000453783 1664 ntBASIC14.84□□□□□ -0.03
CLRN1P58418 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC14.84□□□□□ -0.03
CLRN1P58418 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CLRN1P58418 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
CLRN1P58418 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
CLRN1P58418 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
CLRN1P58418 SLC9A3P2-201ENST00000447821 2021 ntBASIC14.83□□□□□ -0.03
CLRN1P58418 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC14.83□□□□□ -0.03
CLRN1P58418 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.03
CLRN1P58418 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms