Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC136632.2-201ENST00000512891 861 ntBASIC16.08■□□□□ 0.16
FOXA1P55317 SDHD-206ENST00000528182 754 ntTSL 3 BASIC16.08■□□□□ 0.16
FOXA1P55317 CYB561-216ENST00000582297 897 ntTSL 3 BASIC16.08■□□□□ 0.16
FOXA1P55317 CLEC4GP1-201ENST00000596555 870 ntBASIC16.08■□□□□ 0.16
FOXA1P55317 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC16.08■□□□□ 0.16
FOXA1P55317 AC010654.1-201ENST00000615722 808 ntBASIC16.08■□□□□ 0.16
FOXA1P55317 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC16.08■□□□□ 0.16
FOXA1P55317 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
FOXA1P55317 TP73-AS1-207ENST00000624167 988 ntBASIC16.08■□□□□ 0.16
FOXA1P55317 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC16.08■□□□□ 0.16
FOXA1P55317 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
FOXA1P55317 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC16.08■□□□□ 0.16
FOXA1P55317 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
FOXA1P55317 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
FOXA1P55317 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
FOXA1P55317 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
FOXA1P55317 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC16.08■□□□□ 0.16
FOXA1P55317 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
FOXA1P55317 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC16.08■□□□□ 0.16
FOXA1P55317 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
FOXA1P55317 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC16.08■□□□□ 0.16
FOXA1P55317 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
FOXA1P55317 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
FOXA1P55317 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
FOXA1P55317 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
FOXA1P55317 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC16.07■□□□□ 0.16
FOXA1P55317 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
FOXA1P55317 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
FOXA1P55317 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
FOXA1P55317 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
FOXA1P55317 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
FOXA1P55317 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
FOXA1P55317 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
FOXA1P55317 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
FOXA1P55317 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC16.07■□□□□ 0.16
FOXA1P55317 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
FOXA1P55317 HNRNPDP1-201ENST00000439535 754 ntBASIC16.07■□□□□ 0.16
FOXA1P55317 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC16.07■□□□□ 0.16
FOXA1P55317 MMP17-203ENST00000535004 719 ntTSL 3 BASIC16.07■□□□□ 0.16
FOXA1P55317 CIPC-205ENST00000555437 566 ntTSL 3 BASIC16.07■□□□□ 0.16
FOXA1P55317 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
FOXA1P55317 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
FOXA1P55317 AC005412.3-201ENST00000580309 715 ntBASIC16.07■□□□□ 0.16
FOXA1P55317 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC16.07■□□□□ 0.16
FOXA1P55317 AC008667.4-201ENST00000607370 168 ntBASIC16.07■□□□□ 0.16
FOXA1P55317 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
FOXA1P55317 GGTLC5P-201ENST00000617623 998 ntBASIC16.07■□□□□ 0.16
FOXA1P55317 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC16.07■□□□□ 0.16
FOXA1P55317 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
FOXA1P55317 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC16.07■□□□□ 0.16
FOXA1P55317 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC16.07■□□□□ 0.16
FOXA1P55317 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC16.07■□□□□ 0.16
FOXA1P55317 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
FOXA1P55317 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
FOXA1P55317 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC16.07■□□□□ 0.16
FOXA1P55317 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
FOXA1P55317 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC16.07■□□□□ 0.16
FOXA1P55317 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
FOXA1P55317 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC16.07■□□□□ 0.16
FOXA1P55317 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
FOXA1P55317 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
FOXA1P55317 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
FOXA1P55317 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
FOXA1P55317 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC16.06■□□□□ 0.16
FOXA1P55317 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC16.06■□□□□ 0.16
FOXA1P55317 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC16.06■□□□□ 0.16
FOXA1P55317 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
FOXA1P55317 SLC9A3P2-201ENST00000447821 2021 ntBASIC16.06■□□□□ 0.16
FOXA1P55317 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
FOXA1P55317 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
FOXA1P55317 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
FOXA1P55317 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
FOXA1P55317 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
FOXA1P55317 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
FOXA1P55317 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC16.06■□□□□ 0.16
FOXA1P55317 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
FOXA1P55317 AP002414.3-201ENST00000589352 1468 ntBASIC16.06■□□□□ 0.16
FOXA1P55317 AC129492.6-201ENST00000611383 1305 ntBASIC16.06■□□□□ 0.16
FOXA1P55317 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
FOXA1P55317 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC16.06■□□□□ 0.16
FOXA1P55317 CDK2AP2P3-201ENST00000422476 372 ntBASIC16.06■□□□□ 0.16
FOXA1P55317 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
FOXA1P55317 RNPS1P1-201ENST00000507437 918 ntBASIC16.06■□□□□ 0.16
FOXA1P55317 IGHV3-65-201ENST00000523210 341 ntBASIC16.06■□□□□ 0.16
FOXA1P55317 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC16.06■□□□□ 0.16
FOXA1P55317 BMF-207ENST00000559701 630 ntTSL 3 BASIC16.06■□□□□ 0.16
FOXA1P55317 AC012640.2-201ENST00000561606 901 ntBASIC16.06■□□□□ 0.16
FOXA1P55317 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC16.06■□□□□ 0.16
FOXA1P55317 OR7E47P-204ENST00000575924 449 ntBASIC16.06■□□□□ 0.16
FOXA1P55317 LINC01711-201ENST00000598340 967 ntBASIC16.06■□□□□ 0.16
FOXA1P55317 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
FOXA1P55317 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
FOXA1P55317 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
FOXA1P55317 WT1-AS_2.1-201ENST00000613208 137 ntBASIC16.06■□□□□ 0.16
FOXA1P55317 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
FOXA1P55317 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC16.06■□□□□ 0.16
FOXA1P55317 MYB-201ENST00000316528 3571 ntTSL 5 BASIC16.06■□□□□ 0.16
FOXA1P55317 MYB-241ENST00000616088 3573 ntTSL 5 BASIC16.06■□□□□ 0.16
FOXA1P55317 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC16.06■□□□□ 0.16
FOXA1P55317 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 50.8 ms