Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
CDX1P47902 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC13.64□□□□□ -0.23
CDX1P47902 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
CDX1P47902 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC13.64□□□□□ -0.23
CDX1P47902 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CDX1P47902 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CDX1P47902 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CDX1P47902 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
CDX1P47902 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CDX1P47902 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CDX1P47902 AC007326.2-201ENST00000624224 7579 ntBASIC13.64□□□□□ -0.23
CDX1P47902 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CDX1P47902 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
CDX1P47902 PC-208ENST00000529047 1607 ntTSL 3 BASIC13.64□□□□□ -0.23
CDX1P47902 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CDX1P47902 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
CDX1P47902 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC13.64□□□□□ -0.23
CDX1P47902 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC13.64□□□□□ -0.23
CDX1P47902 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
CDX1P47902 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CDX1P47902 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
CDX1P47902 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
CDX1P47902 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC13.63□□□□□ -0.23
CDX1P47902 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC13.63□□□□□ -0.23
CDX1P47902 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC13.63□□□□□ -0.23
CDX1P47902 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC13.63□□□□□ -0.23
CDX1P47902 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CDX1P47902 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CDX1P47902 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CDX1P47902 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
CDX1P47902 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CDX1P47902 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CDX1P47902 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CDX1P47902 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CDX1P47902 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CDX1P47902 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
CDX1P47902 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CDX1P47902 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC13.63□□□□□ -0.23
CDX1P47902 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
CDX1P47902 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC13.63□□□□□ -0.23
CDX1P47902 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CDX1P47902 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
CDX1P47902 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
CDX1P47902 RAB17-203ENST00000409576 466 ntTSL 3 BASIC13.63□□□□□ -0.23
CDX1P47902 NKTR-203ENST00000442970 646 ntTSL 2 BASIC13.63□□□□□ -0.23
CDX1P47902 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC13.63□□□□□ -0.23
CDX1P47902 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
CDX1P47902 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC13.63□□□□□ -0.23
CDX1P47902 IGHV3-52-201ENST00000519770 353 ntBASIC13.63□□□□□ -0.23
CDX1P47902 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC13.63□□□□□ -0.23
CDX1P47902 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC13.63□□□□□ -0.23
CDX1P47902 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC13.63□□□□□ -0.23
CDX1P47902 AC021087.4-201ENST00000563761 564 ntBASIC13.63□□□□□ -0.23
CDX1P47902 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
CDX1P47902 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC13.63□□□□□ -0.23
CDX1P47902 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC13.63□□□□□ -0.23
CDX1P47902 TMED1-207ENST00000591695 809 ntTSL 5 BASIC13.63□□□□□ -0.23
CDX1P47902 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
CDX1P47902 AC073592.5-201ENST00000624854 528 ntBASIC13.63□□□□□ -0.23
CDX1P47902 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CDX1P47902 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CDX1P47902 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CDX1P47902 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CDX1P47902 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC13.63□□□□□ -0.23
CDX1P47902 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
CDX1P47902 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC13.63□□□□□ -0.23
CDX1P47902 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC13.63□□□□□ -0.23
CDX1P47902 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CDX1P47902 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CDX1P47902 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC13.63□□□□□ -0.23
CDX1P47902 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CDX1P47902 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC13.62□□□□□ -0.23
CDX1P47902 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
CDX1P47902 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CDX1P47902 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
CDX1P47902 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
CDX1P47902 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CDX1P47902 BANP-203ENST00000393207 2438 ntTSL 2 BASIC13.62□□□□□ -0.23
CDX1P47902 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC13.62□□□□□ -0.23
CDX1P47902 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
CDX1P47902 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CDX1P47902 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
CDX1P47902 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
CDX1P47902 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CDX1P47902 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CDX1P47902 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
CDX1P47902 VILL-207ENST00000465644 1857 ntTSL 5 BASIC13.62□□□□□ -0.23
CDX1P47902 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
CDX1P47902 MYCLP1-201ENST00000372451 1075 ntBASIC13.62□□□□□ -0.23
CDX1P47902 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
CDX1P47902 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
CDX1P47902 R3HDM2P2-201ENST00000401880 2116 ntBASIC13.62□□□□□ -0.23
CDX1P47902 SPDYE21P-201ENST00000413323 827 ntBASIC13.62□□□□□ -0.23
CDX1P47902 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC13.62□□□□□ -0.23
CDX1P47902 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
CDX1P47902 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC13.62□□□□□ -0.23
CDX1P47902 AC002558.1-201ENST00000488906 803 ntBASIC13.62□□□□□ -0.23
CDX1P47902 RNA5SP419-201ENST00000515908 135 ntBASIC13.62□□□□□ -0.23
CDX1P47902 MTDHP4-201ENST00000600287 670 ntBASIC13.62□□□□□ -0.23
CDX1P47902 BX640515.1-201ENST00000617215 977 ntBASIC13.62□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms