Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
PTPN9P43378 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PTPN9P43378 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PTPN9P43378 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.35
PTPN9P43378 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC17.21■□□□□ 0.35
PTPN9P43378 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
PTPN9P43378 OR6D1P-203ENST00000641209 4860 ntBASIC17.21■□□□□ 0.35
PTPN9P43378 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PTPN9P43378 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.34
PTPN9P43378 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC17.21■□□□□ 0.34
PTPN9P43378 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PTPN9P43378 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
PTPN9P43378 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC17.2■□□□□ 0.34
PTPN9P43378 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC17.2■□□□□ 0.34
PTPN9P43378 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
PTPN9P43378 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
PTPN9P43378 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PTPN9P43378 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC17.2■□□□□ 0.34
PTPN9P43378 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC17.2■□□□□ 0.34
PTPN9P43378 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PTPN9P43378 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PTPN9P43378 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
PTPN9P43378 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC17.2■□□□□ 0.34
PTPN9P43378 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC17.2■□□□□ 0.34
PTPN9P43378 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC17.2■□□□□ 0.34
PTPN9P43378 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC17.2■□□□□ 0.34
PTPN9P43378 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC17.2■□□□□ 0.34
PTPN9P43378 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC17.2■□□□□ 0.34
PTPN9P43378 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PTPN9P43378 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
PTPN9P43378 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
PTPN9P43378 NEK7-201ENST00000367383 586 ntTSL 2 BASIC17.2■□□□□ 0.34
PTPN9P43378 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PTPN9P43378 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC17.2■□□□□ 0.34
PTPN9P43378 FAM58CP-201ENST00000435741 640 ntBASIC17.2■□□□□ 0.34
PTPN9P43378 AC093724.1-201ENST00000448659 1027 ntBASIC17.2■□□□□ 0.34
PTPN9P43378 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC17.2■□□□□ 0.34
PTPN9P43378 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC17.2■□□□□ 0.34
PTPN9P43378 RARRES2P8-201ENST00000566335 367 ntBASIC17.2■□□□□ 0.34
PTPN9P43378 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC17.2■□□□□ 0.34
PTPN9P43378 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC17.2■□□□□ 0.34
PTPN9P43378 MTDHP5-201ENST00000598980 586 ntBASIC17.2■□□□□ 0.34
PTPN9P43378 AC092902.6-201ENST00000641783 218 ntBASIC17.2■□□□□ 0.34
PTPN9P43378 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PTPN9P43378 AC005622.1-201ENST00000636801 1703 ntBASIC17.2■□□□□ 0.34
PTPN9P43378 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC17.2■□□□□ 0.34
PTPN9P43378 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PTPN9P43378 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
PTPN9P43378 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PTPN9P43378 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PTPN9P43378 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC17.2■□□□□ 0.34
PTPN9P43378 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC17.2■□□□□ 0.34
PTPN9P43378 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
PTPN9P43378 AKAP8P1-201ENST00000434743 1349 ntBASIC17.2■□□□□ 0.34
PTPN9P43378 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC17.2■□□□□ 0.34
PTPN9P43378 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
PTPN9P43378 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
PTPN9P43378 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
PTPN9P43378 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
PTPN9P43378 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PTPN9P43378 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
PTPN9P43378 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PTPN9P43378 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PTPN9P43378 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC17.19■□□□□ 0.34
PTPN9P43378 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PTPN9P43378 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
PTPN9P43378 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
PTPN9P43378 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC17.19■□□□□ 0.34
PTPN9P43378 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
PTPN9P43378 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
PTPN9P43378 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PTPN9P43378 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
PTPN9P43378 AL355306.1-201ENST00000415580 579 ntBASIC17.19■□□□□ 0.34
PTPN9P43378 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC17.19■□□□□ 0.34
PTPN9P43378 ADH5P3-201ENST00000433842 1137 ntBASIC17.19■□□□□ 0.34
PTPN9P43378 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC17.19■□□□□ 0.34
PTPN9P43378 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC17.19■□□□□ 0.34
PTPN9P43378 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
PTPN9P43378 QPRT-203ENST00000562473 579 ntTSL 3 BASIC17.19■□□□□ 0.34
PTPN9P43378 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
PTPN9P43378 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
PTPN9P43378 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC17.19■□□□□ 0.34
PTPN9P43378 CITED2-204ENST00000618718 901 ntTSL 2 BASIC17.19■□□□□ 0.34
PTPN9P43378 C20orf181-201ENST00000623918 480 ntBASIC17.19■□□□□ 0.34
PTPN9P43378 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PTPN9P43378 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
PTPN9P43378 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC17.19■□□□□ 0.34
PTPN9P43378 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC17.19■□□□□ 0.34
PTPN9P43378 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
PTPN9P43378 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
PTPN9P43378 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
PTPN9P43378 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
PTPN9P43378 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PTPN9P43378 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PTPN9P43378 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
PTPN9P43378 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PTPN9P43378 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PTPN9P43378 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
PTPN9P43378 REXO1L8P-201ENST00000604378 1897 ntBASIC17.18■□□□□ 0.34
PTPN9P43378 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms