Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC15.66■□□□□ 0.1
SOX3P41225 KRT19P2-202ENST00000557173 1012 ntBASIC15.66■□□□□ 0.1
SOX3P41225 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC15.66■□□□□ 0.1
SOX3P41225 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC15.66■□□□□ 0.1
SOX3P41225 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC15.66■□□□□ 0.1
SOX3P41225 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC15.66■□□□□ 0.1
SOX3P41225 ACTL9-202ENST00000612068 1252 ntBASIC15.66■□□□□ 0.1
SOX3P41225 AC006538.3-201ENST00000612495 578 ntBASIC15.66■□□□□ 0.1
SOX3P41225 HOTTIP_1.1-201ENST00000620415 57 ntBASIC15.66■□□□□ 0.1
SOX3P41225 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
SOX3P41225 AC092068.3-201ENST00000587894 2016 ntBASIC15.66■□□□□ 0.1
SOX3P41225 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SOX3P41225 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
SOX3P41225 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
SOX3P41225 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC15.66■□□□□ 0.1
SOX3P41225 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC15.66■□□□□ 0.1
SOX3P41225 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
SOX3P41225 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC15.66■□□□□ 0.1
SOX3P41225 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
SOX3P41225 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
SOX3P41225 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SOX3P41225 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SOX3P41225 LINC02012-201ENST00000608206 1725 ntBASIC15.65■□□□□ 0.1
SOX3P41225 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SOX3P41225 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC15.65■□□□□ 0.1
SOX3P41225 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC15.65■□□□□ 0.1
SOX3P41225 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC15.65■□□□□ 0.1
SOX3P41225 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
SOX3P41225 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SOX3P41225 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
SOX3P41225 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC15.65■□□□□ 0.1
SOX3P41225 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SOX3P41225 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC15.65■□□□□ 0.1
SOX3P41225 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SOX3P41225 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
SOX3P41225 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
SOX3P41225 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SOX3P41225 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC15.65■□□□□ 0.1
SOX3P41225 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
SOX3P41225 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SOX3P41225 AC007950.2-201ENST00000615045 2347 ntBASIC15.65■□□□□ 0.1
SOX3P41225 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC15.65■□□□□ 0.1
SOX3P41225 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SOX3P41225 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SOX3P41225 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
SOX3P41225 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SOX3P41225 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
SOX3P41225 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC15.65■□□□□ 0.1
SOX3P41225 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC15.65■□□□□ 0.1
SOX3P41225 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC15.65■□□□□ 0.1
SOX3P41225 AL513480.1-201ENST00000451731 511 ntBASIC15.65■□□□□ 0.1
SOX3P41225 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC15.65■□□□□ 0.1
SOX3P41225 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SOX3P41225 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SOX3P41225 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC15.65■□□□□ 0.1
SOX3P41225 MTDHP5-201ENST00000598980 586 ntBASIC15.65■□□□□ 0.1
SOX3P41225 AC023141.13-201ENST00000604991 943 ntBASIC15.65■□□□□ 0.1
SOX3P41225 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC15.65■□□□□ 0.1
SOX3P41225 GPALPP1-207ENST00000611650 899 ntBASIC15.65■□□□□ 0.1
SOX3P41225 AC007064.4-201ENST00000637740 555 ntBASIC15.65■□□□□ 0.1
SOX3P41225 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
SOX3P41225 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SOX3P41225 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC15.65■□□□□ 0.1
SOX3P41225 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
SOX3P41225 AC025580.3-201ENST00000617932 1424 ntBASIC15.65■□□□□ 0.1
SOX3P41225 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC15.65■□□□□ 0.1
SOX3P41225 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SOX3P41225 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC15.65■□□□□ 0.1
SOX3P41225 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC15.65■□□□□ 0.1
SOX3P41225 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SOX3P41225 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SOX3P41225 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SOX3P41225 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SOX3P41225 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC15.64■□□□□ 0.09
SOX3P41225 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SOX3P41225 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC15.64■□□□□ 0.09
SOX3P41225 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
SOX3P41225 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC15.64■□□□□ 0.09
SOX3P41225 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC15.64■□□□□ 0.09
SOX3P41225 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SOX3P41225 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SOX3P41225 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC15.64■□□□□ 0.09
SOX3P41225 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
SOX3P41225 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
SOX3P41225 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SOX3P41225 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
SOX3P41225 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SOX3P41225 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SOX3P41225 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
SOX3P41225 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SOX3P41225 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC15.64■□□□□ 0.09
SOX3P41225 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SOX3P41225 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC15.64■□□□□ 0.09
SOX3P41225 UPF3AP3-201ENST00000420996 769 ntBASIC15.64■□□□□ 0.09
SOX3P41225 MCCD1P2-201ENST00000423228 335 ntBASIC15.64■□□□□ 0.09
SOX3P41225 GPX1P2-201ENST00000429271 606 ntBASIC15.64■□□□□ 0.09
SOX3P41225 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC15.64■□□□□ 0.09
SOX3P41225 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SOX3P41225 SMN2-210ENST00000511812 867 ntTSL 2 BASIC15.64■□□□□ 0.09
SOX3P41225 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms