Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC15.9■□□□□ 0.14
MSX2P35548 AC063926.3-201ENST00000624734 5658 ntBASIC15.9■□□□□ 0.14
MSX2P35548 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC15.89■□□□□ 0.14
MSX2P35548 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
MSX2P35548 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
MSX2P35548 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC15.89■□□□□ 0.13
MSX2P35548 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
MSX2P35548 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
MSX2P35548 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
MSX2P35548 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
MSX2P35548 CDC14C-201ENST00000428251 1719 ntBASIC15.89■□□□□ 0.13
MSX2P35548 AL512652.2-201ENST00000625156 1716 ntBASIC15.89■□□□□ 0.13
MSX2P35548 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
MSX2P35548 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
MSX2P35548 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC15.89■□□□□ 0.13
MSX2P35548 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
MSX2P35548 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
MSX2P35548 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
MSX2P35548 AC091607.1-201ENST00000490318 1060 ntBASIC15.89■□□□□ 0.13
MSX2P35548 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC15.89■□□□□ 0.13
MSX2P35548 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
MSX2P35548 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC15.89■□□□□ 0.13
MSX2P35548 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC15.89■□□□□ 0.13
MSX2P35548 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
MSX2P35548 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
MSX2P35548 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
MSX2P35548 SNX33P1-201ENST00000592116 1762 ntBASIC15.89■□□□□ 0.13
MSX2P35548 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
MSX2P35548 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
MSX2P35548 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
MSX2P35548 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC15.89■□□□□ 0.13
MSX2P35548 LINC02447-202ENST00000501888 2146 ntBASIC15.89■□□□□ 0.13
MSX2P35548 LGALS8-AS1-201ENST00000487567 1457 ntBASIC15.89■□□□□ 0.13
MSX2P35548 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
MSX2P35548 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
MSX2P35548 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
MSX2P35548 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
MSX2P35548 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
MSX2P35548 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
MSX2P35548 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
MSX2P35548 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC15.89■□□□□ 0.13
MSX2P35548 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC15.89■□□□□ 0.13
MSX2P35548 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC15.89■□□□□ 0.13
MSX2P35548 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
MSX2P35548 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
MSX2P35548 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
MSX2P35548 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
MSX2P35548 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
MSX2P35548 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
MSX2P35548 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
MSX2P35548 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC15.88■□□□□ 0.13
MSX2P35548 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
MSX2P35548 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
MSX2P35548 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC15.88■□□□□ 0.13
MSX2P35548 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
MSX2P35548 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
MSX2P35548 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
MSX2P35548 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC15.88■□□□□ 0.13
MSX2P35548 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
MSX2P35548 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
MSX2P35548 AP002414.1-201ENST00000391405 1147 ntBASIC15.88■□□□□ 0.13
MSX2P35548 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC15.88■□□□□ 0.13
MSX2P35548 TSPY22P-201ENST00000427496 604 ntBASIC15.88■□□□□ 0.13
MSX2P35548 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC15.88■□□□□ 0.13
MSX2P35548 ARL16-209ENST00000573715 763 ntTSL 3 BASIC15.88■□□□□ 0.13
MSX2P35548 ARL16-211ENST00000576135 694 ntTSL 3 BASIC15.88■□□□□ 0.13
MSX2P35548 F11R-206ENST00000621309 4770 ntTSL 5 BASIC15.88■□□□□ 0.13
MSX2P35548 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC15.88■□□□□ 0.13
MSX2P35548 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
MSX2P35548 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
MSX2P35548 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
MSX2P35548 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
MSX2P35548 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
MSX2P35548 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
MSX2P35548 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC15.88■□□□□ 0.13
MSX2P35548 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
MSX2P35548 AL031731.1-201ENST00000642131 2094 ntBASIC15.88■□□□□ 0.13
MSX2P35548 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC15.88■□□□□ 0.13
MSX2P35548 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC15.88■□□□□ 0.13
MSX2P35548 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC15.88■□□□□ 0.13
MSX2P35548 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC15.88■□□□□ 0.13
MSX2P35548 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
MSX2P35548 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
MSX2P35548 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
MSX2P35548 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
MSX2P35548 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
MSX2P35548 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
MSX2P35548 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
MSX2P35548 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
MSX2P35548 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
MSX2P35548 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
MSX2P35548 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
MSX2P35548 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
MSX2P35548 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
MSX2P35548 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC15.87■□□□□ 0.13
MSX2P35548 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
MSX2P35548 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
MSX2P35548 ACE-203ENST00000413513 2237 ntTSL 2 BASIC15.87■□□□□ 0.13
MSX2P35548 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC15.87■□□□□ 0.13
MSX2P35548 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms