Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
CXCL1P09341 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC12.92□□□□□ -0.34
CXCL1P09341 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC12.92□□□□□ -0.34
CXCL1P09341 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC12.92□□□□□ -0.34
CXCL1P09341 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CXCL1P09341 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC12.92□□□□□ -0.34
CXCL1P09341 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
CXCL1P09341 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC12.92□□□□□ -0.34
CXCL1P09341 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
CXCL1P09341 AC067930.6-201ENST00000623257 4947 ntBASIC12.92□□□□□ -0.34
CXCL1P09341 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CXCL1P09341 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
CXCL1P09341 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC12.92□□□□□ -0.34
CXCL1P09341 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC12.92□□□□□ -0.34
CXCL1P09341 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CXCL1P09341 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
CXCL1P09341 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC12.92□□□□□ -0.34
CXCL1P09341 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC12.92□□□□□ -0.34
CXCL1P09341 AC232323.1-201ENST00000540724 2099 ntBASIC12.92□□□□□ -0.34
CXCL1P09341 REXO1L5P-201ENST00000622260 2098 ntBASIC12.92□□□□□ -0.34
CXCL1P09341 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CXCL1P09341 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CXCL1P09341 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CXCL1P09341 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CXCL1P09341 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC12.91□□□□□ -0.34
CXCL1P09341 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CXCL1P09341 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC12.91□□□□□ -0.34
CXCL1P09341 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CXCL1P09341 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CXCL1P09341 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC12.91□□□□□ -0.34
CXCL1P09341 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC12.91□□□□□ -0.34
CXCL1P09341 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC12.91□□□□□ -0.34
CXCL1P09341 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CXCL1P09341 STX18-AS1-207ENST00000610009 2406 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CXCL1P09341 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC12.91□□□□□ -0.34
CXCL1P09341 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC12.91□□□□□ -0.34
CXCL1P09341 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC12.91□□□□□ -0.34
CXCL1P09341 AC004817.3-201ENST00000602957 2129 ntBASIC12.91□□□□□ -0.34
CXCL1P09341 AC010327.5-201ENST00000586923 3061 ntBASIC12.91□□□□□ -0.34
CXCL1P09341 ADAM15-209ENST00000449910 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
CXCL1P09341 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
CXCL1P09341 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC12.91□□□□□ -0.34
CXCL1P09341 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC12.91□□□□□ -0.34
CXCL1P09341 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CXCL1P09341 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CXCL1P09341 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CXCL1P09341 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CXCL1P09341 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
CXCL1P09341 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CXCL1P09341 DDT-203ENST00000403754 569 ntTSL 3 BASIC12.91□□□□□ -0.34
CXCL1P09341 DDT-206ENST00000430101 573 ntTSL 2 BASIC12.91□□□□□ -0.34
CXCL1P09341 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC12.91□□□□□ -0.34
CXCL1P09341 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC12.91□□□□□ -0.34
CXCL1P09341 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CXCL1P09341 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC12.91□□□□□ -0.34
CXCL1P09341 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC12.91□□□□□ -0.34
CXCL1P09341 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC12.91□□□□□ -0.34
CXCL1P09341 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC12.91□□□□□ -0.34
CXCL1P09341 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CXCL1P09341 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC12.91□□□□□ -0.34
CXCL1P09341 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
CXCL1P09341 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CXCL1P09341 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
CXCL1P09341 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CXCL1P09341 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CXCL1P09341 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC12.91□□□□□ -0.34
CXCL1P09341 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CXCL1P09341 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CXCL1P09341 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
CXCL1P09341 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CXCL1P09341 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC12.91□□□□□ -0.34
CXCL1P09341 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CXCL1P09341 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CXCL1P09341 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CXCL1P09341 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
CXCL1P09341 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CXCL1P09341 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
CXCL1P09341 GGT4P-201ENST00000623672 1708 ntBASIC12.91□□□□□ -0.34
CXCL1P09341 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CXCL1P09341 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
CXCL1P09341 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC12.9□□□□□ -0.34
CXCL1P09341 AGBL3-202ENST00000435976 2495 ntTSL 5 BASIC12.9□□□□□ -0.34
CXCL1P09341 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
CXCL1P09341 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CXCL1P09341 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
CXCL1P09341 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
CXCL1P09341 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC12.9□□□□□ -0.34
CXCL1P09341 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC12.9□□□□□ -0.34
CXCL1P09341 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
CXCL1P09341 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC12.9□□□□□ -0.34
CXCL1P09341 GIPC2-201ENST00000370759 3847 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CXCL1P09341 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC12.9□□□□□ -0.34
CXCL1P09341 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CXCL1P09341 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CXCL1P09341 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
CXCL1P09341 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CXCL1P09341 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
CXCL1P09341 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC12.9□□□□□ -0.34
CXCL1P09341 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
CXCL1P09341 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms