Protein–RNA interactions for Protein: O75487

GPC4, Glypican-4, humanhuman

Predictions only

Length 556 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GPC4O75487 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC16.7■□□□□ 0.26
GPC4O75487 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
GPC4O75487 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
GPC4O75487 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC16.7■□□□□ 0.26
GPC4O75487 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
GPC4O75487 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
GPC4O75487 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
GPC4O75487 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
GPC4O75487 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
GPC4O75487 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC16.7■□□□□ 0.26
GPC4O75487 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC16.7■□□□□ 0.26
GPC4O75487 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC16.7■□□□□ 0.26
GPC4O75487 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC16.7■□□□□ 0.26
GPC4O75487 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
GPC4O75487 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
GPC4O75487 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
GPC4O75487 MST1L-201ENST00000442552 2185 ntBASIC16.7■□□□□ 0.26
GPC4O75487 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
GPC4O75487 LINC02199-201ENST00000506655 2702 ntBASIC16.69■□□□□ 0.26
GPC4O75487 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
GPC4O75487 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC16.69■□□□□ 0.26
GPC4O75487 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC16.69■□□□□ 0.26
GPC4O75487 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
GPC4O75487 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
GPC4O75487 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
GPC4O75487 FOS-208ENST00000555686 1496 ntTSL 2 BASIC16.69■□□□□ 0.26
GPC4O75487 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
GPC4O75487 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
GPC4O75487 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
GPC4O75487 AC002310.6-201ENST00000624451 1377 ntBASIC16.69■□□□□ 0.26
GPC4O75487 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
GPC4O75487 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
GPC4O75487 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC16.69■□□□□ 0.26
GPC4O75487 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
GPC4O75487 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
GPC4O75487 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
GPC4O75487 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC16.69■□□□□ 0.26
GPC4O75487 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC16.69■□□□□ 0.26
GPC4O75487 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
GPC4O75487 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC16.69■□□□□ 0.26
GPC4O75487 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
GPC4O75487 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
GPC4O75487 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
GPC4O75487 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
GPC4O75487 AL513477.1-201ENST00000602865 2407 ntBASIC16.69■□□□□ 0.26
GPC4O75487 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
GPC4O75487 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC16.69■□□□□ 0.26
GPC4O75487 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
GPC4O75487 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC16.69■□□□□ 0.26
GPC4O75487 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC16.69■□□□□ 0.26
GPC4O75487 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
GPC4O75487 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
GPC4O75487 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
GPC4O75487 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
GPC4O75487 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
GPC4O75487 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
GPC4O75487 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
GPC4O75487 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
GPC4O75487 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
GPC4O75487 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
GPC4O75487 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC16.68■□□□□ 0.26
GPC4O75487 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
GPC4O75487 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
GPC4O75487 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
GPC4O75487 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
GPC4O75487 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
GPC4O75487 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC16.68■□□□□ 0.26
GPC4O75487 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
GPC4O75487 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC16.68■□□□□ 0.26
GPC4O75487 SLC25A6P2-201ENST00000497974 877 ntBASIC16.68■□□□□ 0.26
GPC4O75487 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC16.68■□□□□ 0.26
GPC4O75487 CD63-204ENST00000546939 779 ntTSL 3 BASIC16.68■□□□□ 0.26
GPC4O75487 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC16.68■□□□□ 0.26
GPC4O75487 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC16.68■□□□□ 0.26
GPC4O75487 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC16.68■□□□□ 0.26
GPC4O75487 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC16.68■□□□□ 0.26
GPC4O75487 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC16.68■□□□□ 0.26
GPC4O75487 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC16.68■□□□□ 0.26
GPC4O75487 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
GPC4O75487 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
GPC4O75487 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
GPC4O75487 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
GPC4O75487 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
GPC4O75487 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
GPC4O75487 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC16.68■□□□□ 0.26
GPC4O75487 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
GPC4O75487 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
GPC4O75487 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC16.68■□□□□ 0.26
GPC4O75487 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
GPC4O75487 TUBB8P12-201ENST00000308911 1335 ntBASIC16.68■□□□□ 0.26
GPC4O75487 TUBB7P-202ENST00000428444 1305 ntBASIC16.68■□□□□ 0.26
GPC4O75487 TUBB8P7-204ENST00000567960 1332 ntBASIC16.68■□□□□ 0.26
GPC4O75487 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
GPC4O75487 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
GPC4O75487 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
GPC4O75487 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC16.68■□□□□ 0.26
GPC4O75487 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC16.67■□□□□ 0.26
GPC4O75487 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
GPC4O75487 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
GPC4O75487 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 55.4 ms