Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LIMD1Q9UGP4 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LIMD1Q9UGP4 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LIMD1Q9UGP4 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LIMD1Q9UGP4 AC098614.1-201ENST00000368528 745 ntBASIC17.29■□□□□ 0.36
LIMD1Q9UGP4 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC17.29■□□□□ 0.36
LIMD1Q9UGP4 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
LIMD1Q9UGP4 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC17.29■□□□□ 0.36
LIMD1Q9UGP4 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LIMD1Q9UGP4 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LIMD1Q9UGP4 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
LIMD1Q9UGP4 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC17.29■□□□□ 0.36
LIMD1Q9UGP4 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LIMD1Q9UGP4 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LIMD1Q9UGP4 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC17.29■□□□□ 0.36
LIMD1Q9UGP4 AC140912.1-201ENST00000577171 1054 ntBASIC17.29■□□□□ 0.36
LIMD1Q9UGP4 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC17.29■□□□□ 0.36
LIMD1Q9UGP4 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LIMD1Q9UGP4 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LIMD1Q9UGP4 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LIMD1Q9UGP4 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
LIMD1Q9UGP4 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC17.29■□□□□ 0.36
LIMD1Q9UGP4 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LIMD1Q9UGP4 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LIMD1Q9UGP4 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC17.29■□□□□ 0.36
LIMD1Q9UGP4 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
LIMD1Q9UGP4 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC17.29■□□□□ 0.36
LIMD1Q9UGP4 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
LIMD1Q9UGP4 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LIMD1Q9UGP4 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
LIMD1Q9UGP4 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LIMD1Q9UGP4 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
LIMD1Q9UGP4 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIMD1Q9UGP4 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
LIMD1Q9UGP4 AC087499.5-201ENST00000452760 1342 ntBASIC17.28■□□□□ 0.36
LIMD1Q9UGP4 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LIMD1Q9UGP4 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LIMD1Q9UGP4 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
LIMD1Q9UGP4 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIMD1Q9UGP4 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIMD1Q9UGP4 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC17.28■□□□□ 0.36
LIMD1Q9UGP4 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIMD1Q9UGP4 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC17.28■□□□□ 0.36
LIMD1Q9UGP4 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LIMD1Q9UGP4 DGCR5-201ENST00000399539 862 ntBASIC17.28■□□□□ 0.36
LIMD1Q9UGP4 PP14571-201ENST00000404327 934 ntTSL 2 BASIC17.28■□□□□ 0.36
LIMD1Q9UGP4 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC17.28■□□□□ 0.36
LIMD1Q9UGP4 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
LIMD1Q9UGP4 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC17.28■□□□□ 0.36
LIMD1Q9UGP4 INE1-201ENST00000456273 945 ntBASIC17.28■□□□□ 0.36
LIMD1Q9UGP4 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC17.28■□□□□ 0.36
LIMD1Q9UGP4 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC17.28■□□□□ 0.36
LIMD1Q9UGP4 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC17.28■□□□□ 0.36
LIMD1Q9UGP4 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC17.28■□□□□ 0.36
LIMD1Q9UGP4 AL035078.1-201ENST00000531962 820 ntTSL 5 BASIC17.28■□□□□ 0.36
LIMD1Q9UGP4 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LIMD1Q9UGP4 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC17.28■□□□□ 0.36
LIMD1Q9UGP4 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC17.28■□□□□ 0.36
LIMD1Q9UGP4 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC17.28■□□□□ 0.36
LIMD1Q9UGP4 AC017083.2-201ENST00000608069 979 ntBASIC17.28■□□□□ 0.36
LIMD1Q9UGP4 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC17.28■□□□□ 0.36
LIMD1Q9UGP4 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LIMD1Q9UGP4 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIMD1Q9UGP4 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
LIMD1Q9UGP4 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIMD1Q9UGP4 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC17.28■□□□□ 0.36
LIMD1Q9UGP4 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LIMD1Q9UGP4 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
LIMD1Q9UGP4 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIMD1Q9UGP4 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIMD1Q9UGP4 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC17.27■□□□□ 0.36
LIMD1Q9UGP4 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
LIMD1Q9UGP4 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
LIMD1Q9UGP4 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
LIMD1Q9UGP4 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LIMD1Q9UGP4 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LIMD1Q9UGP4 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
LIMD1Q9UGP4 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
LIMD1Q9UGP4 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC17.27■□□□□ 0.36
LIMD1Q9UGP4 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
LIMD1Q9UGP4 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC17.27■□□□□ 0.36
LIMD1Q9UGP4 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
LIMD1Q9UGP4 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC17.27■□□□□ 0.36
LIMD1Q9UGP4 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC17.27■□□□□ 0.36
LIMD1Q9UGP4 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC17.27■□□□□ 0.36
LIMD1Q9UGP4 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC17.27■□□□□ 0.36
LIMD1Q9UGP4 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC17.27■□□□□ 0.36
LIMD1Q9UGP4 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC17.27■□□□□ 0.36
LIMD1Q9UGP4 MTND6P24-201ENST00000440466 518 ntBASIC17.27■□□□□ 0.36
LIMD1Q9UGP4 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
LIMD1Q9UGP4 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC17.27■□□□□ 0.36
LIMD1Q9UGP4 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC17.27■□□□□ 0.36
LIMD1Q9UGP4 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC17.27■□□□□ 0.36
LIMD1Q9UGP4 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC17.27■□□□□ 0.36
LIMD1Q9UGP4 PRR29-204ENST00000577953 565 ntTSL 4 BASIC17.27■□□□□ 0.36
LIMD1Q9UGP4 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC17.27■□□□□ 0.36
LIMD1Q9UGP4 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LIMD1Q9UGP4 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
LIMD1Q9UGP4 IGHV3-72-202ENST00000621503 303 ntBASIC17.27■□□□□ 0.36
LIMD1Q9UGP4 RAB34-223ENST00000636154 730 ntTSL 2 BASIC17.27■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms