Protein–RNA interactions for Protein: Q9H422

HIPK3, Homeodomain-interacting protein kinase 3, humanhuman

Predictions only

Length 1,215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIPK3Q9H422 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
HIPK3Q9H422 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC18.03■□□□□ 0.48
HIPK3Q9H422 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC18.03■□□□□ 0.48
HIPK3Q9H422 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HIPK3Q9H422 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC18.02■□□□□ 0.48
HIPK3Q9H422 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
HIPK3Q9H422 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HIPK3Q9H422 AC006277.1-201ENST00000624348 1610 ntBASIC18.02■□□□□ 0.48
HIPK3Q9H422 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC18.02■□□□□ 0.48
HIPK3Q9H422 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC18.02■□□□□ 0.48
HIPK3Q9H422 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HIPK3Q9H422 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
HIPK3Q9H422 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC18.02■□□□□ 0.48
HIPK3Q9H422 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC18.02■□□□□ 0.48
HIPK3Q9H422 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HIPK3Q9H422 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HIPK3Q9H422 MEP1AP4-201ENST00000423244 1087 ntBASIC18.02■□□□□ 0.48
HIPK3Q9H422 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HIPK3Q9H422 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC18.02■□□□□ 0.48
HIPK3Q9H422 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC18.02■□□□□ 0.48
HIPK3Q9H422 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC18.02■□□□□ 0.48
HIPK3Q9H422 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC18.02■□□□□ 0.48
HIPK3Q9H422 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC18.02■□□□□ 0.48
HIPK3Q9H422 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC18.02■□□□□ 0.48
HIPK3Q9H422 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC18.02■□□□□ 0.48
HIPK3Q9H422 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC18.02■□□□□ 0.48
HIPK3Q9H422 AL033527.5-202ENST00000641632 1098 ntBASIC18.02■□□□□ 0.48
HIPK3Q9H422 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
HIPK3Q9H422 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
HIPK3Q9H422 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC18.02■□□□□ 0.47
HIPK3Q9H422 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
HIPK3Q9H422 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC18.02■□□□□ 0.47
HIPK3Q9H422 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
HIPK3Q9H422 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
HIPK3Q9H422 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.47
HIPK3Q9H422 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.47
HIPK3Q9H422 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
HIPK3Q9H422 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
HIPK3Q9H422 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HIPK3Q9H422 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
HIPK3Q9H422 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HIPK3Q9H422 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC18.01■□□□□ 0.47
HIPK3Q9H422 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC18.01■□□□□ 0.47
HIPK3Q9H422 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC18.01■□□□□ 0.47
HIPK3Q9H422 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HIPK3Q9H422 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC18.01■□□□□ 0.47
HIPK3Q9H422 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
HIPK3Q9H422 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC18.01■□□□□ 0.47
HIPK3Q9H422 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
HIPK3Q9H422 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC18.01■□□□□ 0.47
HIPK3Q9H422 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC18.01■□□□□ 0.47
HIPK3Q9H422 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC18.01■□□□□ 0.47
HIPK3Q9H422 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC18.01■□□□□ 0.47
HIPK3Q9H422 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
HIPK3Q9H422 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HIPK3Q9H422 NEU3-203ENST00000529024 581 ntTSL 3 BASIC18.01■□□□□ 0.47
HIPK3Q9H422 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
HIPK3Q9H422 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC18.01■□□□□ 0.47
HIPK3Q9H422 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC18.01■□□□□ 0.47
HIPK3Q9H422 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HIPK3Q9H422 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HIPK3Q9H422 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC18.01■□□□□ 0.47
HIPK3Q9H422 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HIPK3Q9H422 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HIPK3Q9H422 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC18.01■□□□□ 0.47
HIPK3Q9H422 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
HIPK3Q9H422 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HIPK3Q9H422 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HIPK3Q9H422 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HIPK3Q9H422 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HIPK3Q9H422 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HIPK3Q9H422 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HIPK3Q9H422 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC18■□□□□ 0.47
HIPK3Q9H422 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
HIPK3Q9H422 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
HIPK3Q9H422 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC18■□□□□ 0.47
HIPK3Q9H422 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HIPK3Q9H422 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC18■□□□□ 0.47
HIPK3Q9H422 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
HIPK3Q9H422 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
HIPK3Q9H422 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC18■□□□□ 0.47
HIPK3Q9H422 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
HIPK3Q9H422 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
HIPK3Q9H422 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HIPK3Q9H422 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HIPK3Q9H422 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC18■□□□□ 0.47
HIPK3Q9H422 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC18■□□□□ 0.47
HIPK3Q9H422 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC18■□□□□ 0.47
HIPK3Q9H422 AC092658.1-201ENST00000505836 891 ntBASIC18■□□□□ 0.47
HIPK3Q9H422 SDHAP3-202ENST00000515467 728 ntBASIC18■□□□□ 0.47
HIPK3Q9H422 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC18■□□□□ 0.47
HIPK3Q9H422 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC18■□□□□ 0.47
HIPK3Q9H422 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC18■□□□□ 0.47
HIPK3Q9H422 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC18■□□□□ 0.47
HIPK3Q9H422 AC013467.2-201ENST00000605472 835 ntBASIC18■□□□□ 0.47
HIPK3Q9H422 AL512343.1-201ENST00000605837 169 ntBASIC18■□□□□ 0.47
HIPK3Q9H422 5S_rRNA.22-201ENST00000614916 106 ntBASIC18■□□□□ 0.47
HIPK3Q9H422 AC004461.2-201ENST00000629517 803 ntBASIC18■□□□□ 0.47
HIPK3Q9H422 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
HIPK3Q9H422 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms