Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC19.55■□□□□ 0.72
BRF1Q92994 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC19.55■□□□□ 0.72
BRF1Q92994 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC19.55■□□□□ 0.72
BRF1Q92994 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
BRF1Q92994 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC19.55■□□□□ 0.72
BRF1Q92994 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC19.55■□□□□ 0.72
BRF1Q92994 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC19.55■□□□□ 0.72
BRF1Q92994 NME4-212ENST00000621774 904 ntTSL 3 BASIC19.55■□□□□ 0.72
BRF1Q92994 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC19.55■□□□□ 0.72
BRF1Q92994 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
BRF1Q92994 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
BRF1Q92994 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
BRF1Q92994 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
BRF1Q92994 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
BRF1Q92994 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
BRF1Q92994 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
BRF1Q92994 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
BRF1Q92994 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
BRF1Q92994 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
BRF1Q92994 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
BRF1Q92994 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
BRF1Q92994 BANP-204ENST00000393208 2283 ntTSL 2 BASIC19.54■□□□□ 0.72
BRF1Q92994 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
BRF1Q92994 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
BRF1Q92994 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
BRF1Q92994 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
BRF1Q92994 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
BRF1Q92994 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
BRF1Q92994 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC19.54■□□□□ 0.72
BRF1Q92994 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC19.54■□□□□ 0.72
BRF1Q92994 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC19.54■□□□□ 0.72
BRF1Q92994 MAL2-202ENST00000531508 892 ntTSL 3 BASIC19.54■□□□□ 0.72
BRF1Q92994 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC19.54■□□□□ 0.72
BRF1Q92994 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC19.54■□□□□ 0.72
BRF1Q92994 AC023141.13-201ENST00000604991 943 ntBASIC19.54■□□□□ 0.72
BRF1Q92994 AC004877.2-201ENST00000623941 599 ntBASIC19.54■□□□□ 0.72
BRF1Q92994 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC19.54■□□□□ 0.72
BRF1Q92994 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
BRF1Q92994 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
BRF1Q92994 AC008741.2-201ENST00000612792 3115 ntBASIC19.54■□□□□ 0.72
BRF1Q92994 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
BRF1Q92994 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
BRF1Q92994 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
BRF1Q92994 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
BRF1Q92994 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
BRF1Q92994 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
BRF1Q92994 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
BRF1Q92994 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
BRF1Q92994 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
BRF1Q92994 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
BRF1Q92994 BCAR1-209ENST00000546196 1340 ntBASIC19.53■□□□□ 0.72
BRF1Q92994 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
BRF1Q92994 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
BRF1Q92994 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
BRF1Q92994 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
BRF1Q92994 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC19.53■□□□□ 0.72
BRF1Q92994 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC19.53■□□□□ 0.72
BRF1Q92994 AC025580.3-201ENST00000617932 1424 ntBASIC19.53■□□□□ 0.72
BRF1Q92994 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
BRF1Q92994 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC19.53■□□□□ 0.72
BRF1Q92994 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
BRF1Q92994 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
BRF1Q92994 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
BRF1Q92994 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC19.53■□□□□ 0.72
BRF1Q92994 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC19.53■□□□□ 0.72
BRF1Q92994 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
BRF1Q92994 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC19.53■□□□□ 0.72
BRF1Q92994 AC106730.1-201ENST00000566722 1090 ntBASIC19.53■□□□□ 0.72
BRF1Q92994 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC19.53■□□□□ 0.72
BRF1Q92994 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC19.53■□□□□ 0.72
BRF1Q92994 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC19.53■□□□□ 0.72
BRF1Q92994 CROCCP1-201ENST00000426910 5675 ntBASIC19.53■□□□□ 0.72
BRF1Q92994 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
BRF1Q92994 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
BRF1Q92994 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC19.53■□□□□ 0.72
BRF1Q92994 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
BRF1Q92994 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC19.53■□□□□ 0.72
BRF1Q92994 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
BRF1Q92994 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
BRF1Q92994 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
BRF1Q92994 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC19.53■□□□□ 0.72
BRF1Q92994 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
BRF1Q92994 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC19.53■□□□□ 0.72
BRF1Q92994 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
BRF1Q92994 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC19.52■□□□□ 0.72
BRF1Q92994 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
BRF1Q92994 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC19.52■□□□□ 0.72
BRF1Q92994 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
BRF1Q92994 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC19.52■□□□□ 0.72
BRF1Q92994 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
BRF1Q92994 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
BRF1Q92994 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC19.52■□□□□ 0.72
BRF1Q92994 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
BRF1Q92994 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
BRF1Q92994 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC19.52■□□□□ 0.72
BRF1Q92994 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC19.52■□□□□ 0.72
BRF1Q92994 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC19.52■□□□□ 0.72
BRF1Q92994 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC19.52■□□□□ 0.72
BRF1Q92994 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
BRF1Q92994 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms