Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HDDC3Q8N4P3 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HDDC3Q8N4P3 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC16.64■□□□□ 0.25
HDDC3Q8N4P3 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
HDDC3Q8N4P3 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC16.64■□□□□ 0.25
HDDC3Q8N4P3 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HDDC3Q8N4P3 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
HDDC3Q8N4P3 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
HDDC3Q8N4P3 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC16.63■□□□□ 0.25
HDDC3Q8N4P3 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
HDDC3Q8N4P3 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
HDDC3Q8N4P3 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HDDC3Q8N4P3 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC16.63■□□□□ 0.25
HDDC3Q8N4P3 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HDDC3Q8N4P3 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
HDDC3Q8N4P3 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
HDDC3Q8N4P3 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HDDC3Q8N4P3 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HDDC3Q8N4P3 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
HDDC3Q8N4P3 PC-204ENST00000524491 1714 ntTSL 2 BASIC16.63■□□□□ 0.25
HDDC3Q8N4P3 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
HDDC3Q8N4P3 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC16.63■□□□□ 0.25
HDDC3Q8N4P3 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC16.63■□□□□ 0.25
HDDC3Q8N4P3 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC16.63■□□□□ 0.25
HDDC3Q8N4P3 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
HDDC3Q8N4P3 AC097493.3-201ENST00000509725 367 ntBASIC16.63■□□□□ 0.25
HDDC3Q8N4P3 AP005018.1-201ENST00000525475 301 ntBASIC16.63■□□□□ 0.25
HDDC3Q8N4P3 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC16.63■□□□□ 0.25
HDDC3Q8N4P3 AC073389.1-201ENST00000595595 795 ntBASIC16.63■□□□□ 0.25
HDDC3Q8N4P3 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HDDC3Q8N4P3 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC16.63■□□□□ 0.25
HDDC3Q8N4P3 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
HDDC3Q8N4P3 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HDDC3Q8N4P3 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
HDDC3Q8N4P3 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
HDDC3Q8N4P3 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HDDC3Q8N4P3 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HDDC3Q8N4P3 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HDDC3Q8N4P3 AL391256.1-201ENST00000443260 1855 ntBASIC16.63■□□□□ 0.25
HDDC3Q8N4P3 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
HDDC3Q8N4P3 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HDDC3Q8N4P3 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
HDDC3Q8N4P3 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HDDC3Q8N4P3 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HDDC3Q8N4P3 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC16.62■□□□□ 0.25
HDDC3Q8N4P3 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC16.62■□□□□ 0.25
HDDC3Q8N4P3 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HDDC3Q8N4P3 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC16.62■□□□□ 0.25
HDDC3Q8N4P3 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC16.62■□□□□ 0.25
HDDC3Q8N4P3 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HDDC3Q8N4P3 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
HDDC3Q8N4P3 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
HDDC3Q8N4P3 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HDDC3Q8N4P3 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC16.62■□□□□ 0.25
HDDC3Q8N4P3 SNX33P1-201ENST00000592116 1762 ntBASIC16.62■□□□□ 0.25
HDDC3Q8N4P3 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
HDDC3Q8N4P3 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC16.62■□□□□ 0.25
HDDC3Q8N4P3 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HDDC3Q8N4P3 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
HDDC3Q8N4P3 PP14571-201ENST00000404327 934 ntTSL 2 BASIC16.62■□□□□ 0.25
HDDC3Q8N4P3 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC16.62■□□□□ 0.25
HDDC3Q8N4P3 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC16.62■□□□□ 0.25
HDDC3Q8N4P3 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC16.62■□□□□ 0.25
HDDC3Q8N4P3 AC007274.1-201ENST00000439805 662 ntBASIC16.62■□□□□ 0.25
HDDC3Q8N4P3 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HDDC3Q8N4P3 PPP6R2P1-201ENST00000450880 1275 ntBASIC16.62■□□□□ 0.25
HDDC3Q8N4P3 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC16.62■□□□□ 0.25
HDDC3Q8N4P3 RPS15-212ENST00000593052 629 ntTSL 2 BASIC16.62■□□□□ 0.25
HDDC3Q8N4P3 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC16.62■□□□□ 0.25
HDDC3Q8N4P3 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC16.62■□□□□ 0.25
HDDC3Q8N4P3 AP3S2-216ENST00000617003 1561 ntBASIC16.62■□□□□ 0.25
HDDC3Q8N4P3 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC16.62■□□□□ 0.25
HDDC3Q8N4P3 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC16.62■□□□□ 0.25
HDDC3Q8N4P3 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HDDC3Q8N4P3 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
HDDC3Q8N4P3 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC16.62■□□□□ 0.25
HDDC3Q8N4P3 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HDDC3Q8N4P3 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HDDC3Q8N4P3 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HDDC3Q8N4P3 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HDDC3Q8N4P3 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HDDC3Q8N4P3 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HDDC3Q8N4P3 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
HDDC3Q8N4P3 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HDDC3Q8N4P3 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC16.61■□□□□ 0.25
HDDC3Q8N4P3 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HDDC3Q8N4P3 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HDDC3Q8N4P3 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HDDC3Q8N4P3 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HDDC3Q8N4P3 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HDDC3Q8N4P3 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HDDC3Q8N4P3 DPM2-202ENST00000373110 738 ntTSL 2 BASIC16.61■□□□□ 0.25
HDDC3Q8N4P3 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC16.61■□□□□ 0.25
HDDC3Q8N4P3 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC16.61■□□□□ 0.25
HDDC3Q8N4P3 PIN1P1-201ENST00000412108 996 ntBASIC16.61■□□□□ 0.25
HDDC3Q8N4P3 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC16.61■□□□□ 0.25
HDDC3Q8N4P3 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC16.61■□□□□ 0.25
HDDC3Q8N4P3 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC16.61■□□□□ 0.25
HDDC3Q8N4P3 AP002490.2-201ENST00000524791 560 ntBASIC16.61■□□□□ 0.25
HDDC3Q8N4P3 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 69.6 ms