Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC13.88□□□□□ -0.19
PDLIM3Q53GG5 AC109462.3-201ENST00000573934 613 ntBASIC13.88□□□□□ -0.19
PDLIM3Q53GG5 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC13.88□□□□□ -0.19
PDLIM3Q53GG5 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC13.88□□□□□ -0.19
PDLIM3Q53GG5 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC13.88□□□□□ -0.19
PDLIM3Q53GG5 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC13.88□□□□□ -0.19
PDLIM3Q53GG5 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
PDLIM3Q53GG5 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
PDLIM3Q53GG5 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC13.88□□□□□ -0.19
PDLIM3Q53GG5 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
PDLIM3Q53GG5 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
PDLIM3Q53GG5 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
PDLIM3Q53GG5 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
PDLIM3Q53GG5 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
PDLIM3Q53GG5 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
PDLIM3Q53GG5 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
PDLIM3Q53GG5 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
PDLIM3Q53GG5 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC13.88□□□□□ -0.19
PDLIM3Q53GG5 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
PDLIM3Q53GG5 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
PDLIM3Q53GG5 AL049757.1-201ENST00000616842 1596 ntBASIC13.88□□□□□ -0.19
PDLIM3Q53GG5 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
PDLIM3Q53GG5 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
PDLIM3Q53GG5 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
PDLIM3Q53GG5 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
PDLIM3Q53GG5 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC13.87□□□□□ -0.19
PDLIM3Q53GG5 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
PDLIM3Q53GG5 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
PDLIM3Q53GG5 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
PDLIM3Q53GG5 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
PDLIM3Q53GG5 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
PDLIM3Q53GG5 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC13.87□□□□□ -0.19
PDLIM3Q53GG5 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
PDLIM3Q53GG5 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
PDLIM3Q53GG5 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
PDLIM3Q53GG5 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
PDLIM3Q53GG5 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
PDLIM3Q53GG5 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
PDLIM3Q53GG5 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
PDLIM3Q53GG5 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC13.87□□□□□ -0.19
PDLIM3Q53GG5 PTMS-202ENST00000389462 773 ntTSL 2 BASIC13.87□□□□□ -0.19
PDLIM3Q53GG5 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
PDLIM3Q53GG5 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
PDLIM3Q53GG5 CSF3-203ENST00000394148 622 ntTSL 3 BASIC13.87□□□□□ -0.19
PDLIM3Q53GG5 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC13.87□□□□□ -0.19
PDLIM3Q53GG5 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC13.87□□□□□ -0.19
PDLIM3Q53GG5 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
PDLIM3Q53GG5 CDV3-207ENST00000508481 661 ntTSL 3 BASIC13.87□□□□□ -0.19
PDLIM3Q53GG5 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC13.87□□□□□ -0.19
PDLIM3Q53GG5 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
PDLIM3Q53GG5 SPCS2P1-201ENST00000561636 679 ntBASIC13.87□□□□□ -0.19
PDLIM3Q53GG5 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
PDLIM3Q53GG5 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
PDLIM3Q53GG5 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC13.87□□□□□ -0.19
PDLIM3Q53GG5 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
PDLIM3Q53GG5 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
PDLIM3Q53GG5 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
PDLIM3Q53GG5 AC008741.2-201ENST00000612792 3115 ntBASIC13.87□□□□□ -0.19
PDLIM3Q53GG5 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC13.87□□□□□ -0.19
PDLIM3Q53GG5 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
PDLIM3Q53GG5 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC13.87□□□□□ -0.19
PDLIM3Q53GG5 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
PDLIM3Q53GG5 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
PDLIM3Q53GG5 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
PDLIM3Q53GG5 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
PDLIM3Q53GG5 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
PDLIM3Q53GG5 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
PDLIM3Q53GG5 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
PDLIM3Q53GG5 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
PDLIM3Q53GG5 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC13.87□□□□□ -0.19
PDLIM3Q53GG5 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
PDLIM3Q53GG5 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
PDLIM3Q53GG5 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
PDLIM3Q53GG5 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC13.86□□□□□ -0.19
PDLIM3Q53GG5 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC13.86□□□□□ -0.19
PDLIM3Q53GG5 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC13.86□□□□□ -0.19
PDLIM3Q53GG5 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC13.86□□□□□ -0.19
PDLIM3Q53GG5 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
PDLIM3Q53GG5 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
PDLIM3Q53GG5 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
PDLIM3Q53GG5 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC13.86□□□□□ -0.19
PDLIM3Q53GG5 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
PDLIM3Q53GG5 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
PDLIM3Q53GG5 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
PDLIM3Q53GG5 AC092474.2-201ENST00000424288 719 ntBASIC13.86□□□□□ -0.19
PDLIM3Q53GG5 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC13.86□□□□□ -0.19
PDLIM3Q53GG5 GUSBP12-201ENST00000513727 720 ntBASIC13.86□□□□□ -0.19
PDLIM3Q53GG5 RNA5SP416-201ENST00000516838 111 ntBASIC13.86□□□□□ -0.19
PDLIM3Q53GG5 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC13.86□□□□□ -0.19
PDLIM3Q53GG5 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC13.86□□□□□ -0.19
PDLIM3Q53GG5 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC13.86□□□□□ -0.19
PDLIM3Q53GG5 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
PDLIM3Q53GG5 STK25P1-201ENST00000585406 838 ntBASIC13.86□□□□□ -0.19
PDLIM3Q53GG5 MTDHP5-201ENST00000598980 586 ntBASIC13.86□□□□□ -0.19
PDLIM3Q53GG5 AL592071.1-201ENST00000611956 408 ntBASIC13.86□□□□□ -0.19
PDLIM3Q53GG5 AC124864.1-201ENST00000623408 392 ntBASIC13.86□□□□□ -0.19
PDLIM3Q53GG5 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC13.86□□□□□ -0.19
PDLIM3Q53GG5 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
PDLIM3Q53GG5 AC125634.1-201ENST00000438758 1403 ntBASIC13.86□□□□□ -0.19
PDLIM3Q53GG5 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms