Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
CDH11P55287 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
CDH11P55287 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CDH11P55287 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CDH11P55287 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CDH11P55287 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
CDH11P55287 AL356309.3-201ENST00000624132 1934 ntBASIC15.29■□□□□ 0.04
CDH11P55287 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
CDH11P55287 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CDH11P55287 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC15.29■□□□□ 0.04
CDH11P55287 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CDH11P55287 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
CDH11P55287 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC15.29■□□□□ 0.04
CDH11P55287 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CDH11P55287 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC15.29■□□□□ 0.04
CDH11P55287 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
CDH11P55287 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CDH11P55287 IL9RP2-201ENST00000423948 1312 ntBASIC15.29■□□□□ 0.04
CDH11P55287 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CDH11P55287 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CDH11P55287 RPS2P28-201ENST00000314255 741 ntBASIC15.29■□□□□ 0.04
CDH11P55287 CD9-202ENST00000382515 1229 ntTSL 5 BASIC15.29■□□□□ 0.04
CDH11P55287 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC15.29■□□□□ 0.04
CDH11P55287 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CDH11P55287 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CDH11P55287 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CDH11P55287 RNA5SP419-201ENST00000515908 135 ntBASIC15.29■□□□□ 0.04
CDH11P55287 COX5A-202ENST00000562233 441 ntTSL 3 BASIC15.29■□□□□ 0.04
CDH11P55287 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC15.29■□□□□ 0.04
CDH11P55287 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC15.29■□□□□ 0.04
CDH11P55287 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC15.29■□□□□ 0.04
CDH11P55287 AL139288.1-201ENST00000623748 933 ntBASIC15.29■□□□□ 0.04
CDH11P55287 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CDH11P55287 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
CDH11P55287 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CDH11P55287 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
CDH11P55287 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
CDH11P55287 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CDH11P55287 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CDH11P55287 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC15.29■□□□□ 0.04
CDH11P55287 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC15.29■□□□□ 0.04
CDH11P55287 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CDH11P55287 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CDH11P55287 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CDH11P55287 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CDH11P55287 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC15.29■□□□□ 0.04
CDH11P55287 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CDH11P55287 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CDH11P55287 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC15.28■□□□□ 0.04
CDH11P55287 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC15.28■□□□□ 0.04
CDH11P55287 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CDH11P55287 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CDH11P55287 MTHFR-217ENST00000641820 1569 ntBASIC15.28■□□□□ 0.04
CDH11P55287 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC15.28■□□□□ 0.04
CDH11P55287 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC15.28■□□□□ 0.04
CDH11P55287 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CDH11P55287 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
CDH11P55287 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CDH11P55287 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CDH11P55287 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CDH11P55287 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CDH11P55287 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CDH11P55287 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC15.28■□□□□ 0.04
CDH11P55287 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CDH11P55287 TEX30-205ENST00000376029 959 ntTSL 2 BASIC15.28■□□□□ 0.04
CDH11P55287 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC15.28■□□□□ 0.04
CDH11P55287 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC15.28■□□□□ 0.04
CDH11P55287 HLA-J-202ENST00000469281 1241 ntBASIC15.28■□□□□ 0.04
CDH11P55287 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC15.28■□□□□ 0.04
CDH11P55287 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC15.28■□□□□ 0.04
CDH11P55287 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CDH11P55287 SART3-203ENST00000546611 1184 ntBASIC15.28■□□□□ 0.04
CDH11P55287 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CDH11P55287 PRKN-208ENST00000610470 531 ntTSL 2 BASIC15.28■□□□□ 0.04
CDH11P55287 PRKN-209ENST00000612485 225 ntTSL 5 BASIC15.28■□□□□ 0.04
CDH11P55287 MIR7706-201ENST00000613747 67 ntBASIC15.28■□□□□ 0.04
CDH11P55287 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CDH11P55287 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC15.28■□□□□ 0.04
CDH11P55287 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CDH11P55287 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CDH11P55287 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CDH11P55287 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CDH11P55287 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CDH11P55287 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC15.28■□□□□ 0.04
CDH11P55287 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC15.28■□□□□ 0.04
CDH11P55287 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CDH11P55287 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CDH11P55287 AC105917.1-201ENST00000506637 2539 ntBASIC15.27■□□□□ 0.04
CDH11P55287 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CDH11P55287 MYB-242ENST00000618728 3545 ntTSL 5 BASIC15.27■□□□□ 0.04
CDH11P55287 ME2P1-201ENST00000426028 1970 ntBASIC15.27■□□□□ 0.04
CDH11P55287 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CDH11P55287 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CDH11P55287 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
CDH11P55287 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CDH11P55287 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CDH11P55287 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
CDH11P55287 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CDH11P55287 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CDH11P55287 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms