Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CTCFP49711 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC19.13■□□□□ 0.65
CTCFP49711 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
CTCFP49711 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
CTCFP49711 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CTCFP49711 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CTCFP49711 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CTCFP49711 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CTCFP49711 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CTCFP49711 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CTCFP49711 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
CTCFP49711 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CTCFP49711 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CTCFP49711 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
CTCFP49711 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC19.12■□□□□ 0.65
CTCFP49711 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CTCFP49711 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC19.12■□□□□ 0.65
CTCFP49711 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
CTCFP49711 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC19.12■□□□□ 0.65
CTCFP49711 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CTCFP49711 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CTCFP49711 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC19.12■□□□□ 0.65
CTCFP49711 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CTCFP49711 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CTCFP49711 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
CTCFP49711 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC19.12■□□□□ 0.65
CTCFP49711 SDHAP3-202ENST00000515467 728 ntBASIC19.12■□□□□ 0.65
CTCFP49711 RIT1-205ENST00000539040 919 ntTSL 2 BASIC19.12■□□□□ 0.65
CTCFP49711 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC19.12■□□□□ 0.65
CTCFP49711 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC19.12■□□□□ 0.65
CTCFP49711 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC19.12■□□□□ 0.65
CTCFP49711 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
CTCFP49711 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
CTCFP49711 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC19.12■□□□□ 0.65
CTCFP49711 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CTCFP49711 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CTCFP49711 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CTCFP49711 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
CTCFP49711 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC19.12■□□□□ 0.65
CTCFP49711 SP100-208ENST00000427101 1922 ntTSL 2 BASIC19.12■□□□□ 0.65
CTCFP49711 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
CTCFP49711 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
CTCFP49711 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CTCFP49711 FOXO1B-201ENST00000504678 1527 ntBASIC19.11■□□□□ 0.65
CTCFP49711 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CTCFP49711 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CTCFP49711 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC19.11■□□□□ 0.65
CTCFP49711 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
CTCFP49711 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC19.11■□□□□ 0.65
CTCFP49711 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CTCFP49711 AC012313.1-201ENST00000593393 3059 ntBASIC19.11■□□□□ 0.65
CTCFP49711 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CTCFP49711 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CTCFP49711 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CTCFP49711 GZMB-202ENST00000382540 816 ntTSL 5 BASIC19.11■□□□□ 0.65
CTCFP49711 IGF1-203ENST00000392904 761 ntTSL 5 BASIC19.11■□□□□ 0.65
CTCFP49711 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC19.11■□□□□ 0.65
CTCFP49711 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
CTCFP49711 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC19.11■□□□□ 0.65
CTCFP49711 NME4-207ENST00000450036 985 ntTSL 3 BASIC19.11■□□□□ 0.65
CTCFP49711 UPF3AP2-201ENST00000457924 1132 ntBASIC19.11■□□□□ 0.65
CTCFP49711 RPL13AP20-201ENST00000459725 609 ntBASIC19.11■□□□□ 0.65
CTCFP49711 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
CTCFP49711 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC19.11■□□□□ 0.65
CTCFP49711 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC19.11■□□□□ 0.65
CTCFP49711 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC19.11■□□□□ 0.65
CTCFP49711 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC19.11■□□□□ 0.65
CTCFP49711 PAM16-204ENST00000571941 674 ntTSL 3 BASIC19.11■□□□□ 0.65
CTCFP49711 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC19.11■□□□□ 0.65
CTCFP49711 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC19.11■□□□□ 0.65
CTCFP49711 RPSAP52-203ENST00000622976 1023 ntBASIC19.11■□□□□ 0.65
CTCFP49711 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC19.11■□□□□ 0.65
CTCFP49711 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CTCFP49711 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CTCFP49711 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC19.11■□□□□ 0.65
CTCFP49711 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC19.11■□□□□ 0.65
CTCFP49711 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CTCFP49711 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
CTCFP49711 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CTCFP49711 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CTCFP49711 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
CTCFP49711 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CTCFP49711 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC19.1■□□□□ 0.65
CTCFP49711 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CTCFP49711 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CTCFP49711 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CTCFP49711 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC19.1■□□□□ 0.65
CTCFP49711 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC19.1■□□□□ 0.65
CTCFP49711 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC19.1■□□□□ 0.65
CTCFP49711 AC104457.1-201ENST00000401024 814 ntBASIC19.1■□□□□ 0.65
CTCFP49711 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CTCFP49711 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC19.1■□□□□ 0.65
CTCFP49711 AC104596.2-201ENST00000512793 793 ntBASIC19.1■□□□□ 0.65
CTCFP49711 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC19.1■□□□□ 0.65
CTCFP49711 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC19.1■□□□□ 0.65
CTCFP49711 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CTCFP49711 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CTCFP49711 CDC14C-201ENST00000428251 1719 ntBASIC19.1■□□□□ 0.65
CTCFP49711 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
CTCFP49711 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC19.1■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms