Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SOX2P48431 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
SOX2P48431 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
SOX2P48431 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SOX2P48431 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
SOX2P48431 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
SOX2P48431 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
SOX2P48431 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
SOX2P48431 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC14.69□□□□□ -0.06
SOX2P48431 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC14.69□□□□□ -0.06
SOX2P48431 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC14.69□□□□□ -0.06
SOX2P48431 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC14.69□□□□□ -0.06
SOX2P48431 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SOX2P48431 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SOX2P48431 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
SOX2P48431 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
SOX2P48431 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
SOX2P48431 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
SOX2P48431 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SOX2P48431 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
SOX2P48431 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SOX2P48431 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC14.69□□□□□ -0.06
SOX2P48431 KRT17P6-201ENST00000453795 1220 ntBASIC14.69□□□□□ -0.06
SOX2P48431 TOB2P1-201ENST00000469761 992 ntBASIC14.69□□□□□ -0.06
SOX2P48431 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC14.69□□□□□ -0.06
SOX2P48431 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC14.69□□□□□ -0.06
SOX2P48431 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC14.69□□□□□ -0.06
SOX2P48431 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC14.69□□□□□ -0.06
SOX2P48431 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
SOX2P48431 AP000867.4-201ENST00000641616 219 ntBASIC14.69□□□□□ -0.06
SOX2P48431 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
SOX2P48431 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
SOX2P48431 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC14.69□□□□□ -0.06
SOX2P48431 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SOX2P48431 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC14.69□□□□□ -0.06
SOX2P48431 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC14.69□□□□□ -0.06
SOX2P48431 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
SOX2P48431 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
SOX2P48431 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
SOX2P48431 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SOX2P48431 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
SOX2P48431 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC14.69□□□□□ -0.06
SOX2P48431 AL671710.1-201ENST00000610245 2349 ntBASIC14.69□□□□□ -0.06
SOX2P48431 MIR600HG-201ENST00000449175 5984 ntBASIC14.69□□□□□ -0.06
SOX2P48431 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
SOX2P48431 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
SOX2P48431 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
SOX2P48431 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SOX2P48431 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SOX2P48431 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SOX2P48431 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC14.68□□□□□ -0.06
SOX2P48431 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
SOX2P48431 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC14.68□□□□□ -0.06
SOX2P48431 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
SOX2P48431 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC14.68□□□□□ -0.06
SOX2P48431 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC14.68□□□□□ -0.06
SOX2P48431 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SOX2P48431 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
SOX2P48431 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC14.68□□□□□ -0.06
SOX2P48431 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SOX2P48431 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC14.68□□□□□ -0.06
SOX2P48431 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC14.68□□□□□ -0.06
SOX2P48431 PPIH-202ENST00000372549 327 ntTSL 3 BASIC14.68□□□□□ -0.06
SOX2P48431 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SOX2P48431 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC14.68□□□□□ -0.06
SOX2P48431 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC14.68□□□□□ -0.06
SOX2P48431 NABP1-203ENST00000409510 843 ntTSL 5 BASIC14.68□□□□□ -0.06
SOX2P48431 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SOX2P48431 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
SOX2P48431 CDV3-207ENST00000508481 661 ntTSL 3 BASIC14.68□□□□□ -0.06
SOX2P48431 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SOX2P48431 LTBR-211ENST00000543190 785 ntTSL 3 BASIC14.68□□□□□ -0.06
SOX2P48431 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC14.68□□□□□ -0.06
SOX2P48431 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC14.68□□□□□ -0.06
SOX2P48431 CYB561-217ENST00000582997 877 ntTSL 5 BASIC14.68□□□□□ -0.06
SOX2P48431 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
SOX2P48431 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC14.68□□□□□ -0.06
SOX2P48431 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
SOX2P48431 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC14.68□□□□□ -0.06
SOX2P48431 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SOX2P48431 AC010491.1-201ENST00000563101 2797 ntBASIC14.68□□□□□ -0.06
SOX2P48431 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SOX2P48431 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC14.68□□□□□ -0.06
SOX2P48431 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
SOX2P48431 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC14.68□□□□□ -0.06
SOX2P48431 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC14.68□□□□□ -0.06
SOX2P48431 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
SOX2P48431 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
SOX2P48431 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC14.68□□□□□ -0.06
SOX2P48431 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC14.68□□□□□ -0.06
SOX2P48431 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC14.68□□□□□ -0.06
SOX2P48431 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SOX2P48431 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SOX2P48431 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SOX2P48431 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SOX2P48431 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
SOX2P48431 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
SOX2P48431 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SOX2P48431 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SOX2P48431 AC005332.1-201ENST00000577698 1310 ntBASIC14.67□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 55.3 ms