Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
CIITAP33076 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CIITAP33076 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CIITAP33076 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC18.65■□□□□ 0.58
CIITAP33076 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC18.65■□□□□ 0.58
CIITAP33076 AL512356.2-201ENST00000546955 174 ntBASIC18.65■□□□□ 0.58
CIITAP33076 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC18.65■□□□□ 0.58
CIITAP33076 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
CIITAP33076 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CIITAP33076 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
CIITAP33076 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CIITAP33076 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CIITAP33076 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
CIITAP33076 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.58
CIITAP33076 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.58
CIITAP33076 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
CIITAP33076 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC18.64■□□□□ 0.58
CIITAP33076 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC18.64■□□□□ 0.57
CIITAP33076 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC18.64■□□□□ 0.57
CIITAP33076 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CIITAP33076 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
CIITAP33076 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
CIITAP33076 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.57
CIITAP33076 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC18.64■□□□□ 0.57
CIITAP33076 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CIITAP33076 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC18.64■□□□□ 0.57
CIITAP33076 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC18.64■□□□□ 0.57
CIITAP33076 GGCT-205ENST00000409436 954 ntTSL 3 BASIC18.64■□□□□ 0.57
CIITAP33076 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC18.64■□□□□ 0.57
CIITAP33076 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC18.64■□□□□ 0.57
CIITAP33076 AC109322.1-201ENST00000524499 1264 ntBASIC18.64■□□□□ 0.57
CIITAP33076 DAD1-205ENST00000543337 501 ntTSL 3 BASIC18.64■□□□□ 0.57
CIITAP33076 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC18.64■□□□□ 0.57
CIITAP33076 AP001059.3-201ENST00000619053 235 ntBASIC18.64■□□□□ 0.57
CIITAP33076 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CIITAP33076 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CIITAP33076 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC18.64■□□□□ 0.57
CIITAP33076 PKD1P1-201ENST00000458669 6805 ntBASIC18.64■□□□□ 0.57
CIITAP33076 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CIITAP33076 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC18.64■□□□□ 0.57
CIITAP33076 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC18.64■□□□□ 0.57
CIITAP33076 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
CIITAP33076 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC18.64■□□□□ 0.57
CIITAP33076 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC18.64■□□□□ 0.57
CIITAP33076 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CIITAP33076 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
CIITAP33076 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
CIITAP33076 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
CIITAP33076 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC18.63■□□□□ 0.57
CIITAP33076 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CIITAP33076 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CIITAP33076 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC18.63■□□□□ 0.57
CIITAP33076 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CIITAP33076 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CIITAP33076 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CIITAP33076 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
CIITAP33076 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CIITAP33076 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
CIITAP33076 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CIITAP33076 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC18.63■□□□□ 0.57
CIITAP33076 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC18.63■□□□□ 0.57
CIITAP33076 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CIITAP33076 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CIITAP33076 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
CIITAP33076 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC18.63■□□□□ 0.57
CIITAP33076 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CIITAP33076 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
CIITAP33076 AC098859.1-201ENST00000502915 1238 ntBASIC18.63■□□□□ 0.57
CIITAP33076 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CIITAP33076 GATD1-206ENST00000526325 756 ntTSL 5 BASIC18.63■□□□□ 0.57
CIITAP33076 SPTSSB-204ENST00000617024 1292 ntBASIC18.63■□□□□ 0.57
CIITAP33076 RAB34-224ENST00000636513 888 ntTSL 5 BASIC18.63■□□□□ 0.57
CIITAP33076 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CIITAP33076 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
CIITAP33076 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CIITAP33076 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC18.63■□□□□ 0.57
CIITAP33076 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC18.63■□□□□ 0.57
CIITAP33076 ME2P1-201ENST00000426028 1970 ntBASIC18.62■□□□□ 0.57
CIITAP33076 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC18.62■□□□□ 0.57
CIITAP33076 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC18.62■□□□□ 0.57
CIITAP33076 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC18.62■□□□□ 0.57
CIITAP33076 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC18.62■□□□□ 0.57
CIITAP33076 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CIITAP33076 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CIITAP33076 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
CIITAP33076 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
CIITAP33076 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CIITAP33076 RPL30-202ENST00000396070 440 ntTSL 2 BASIC18.62■□□□□ 0.57
CIITAP33076 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC18.62■□□□□ 0.57
CIITAP33076 SPDYE14P-201ENST00000442619 822 ntBASIC18.62■□□□□ 0.57
CIITAP33076 POU5F1P6-201ENST00000466990 990 ntBASIC18.62■□□□□ 0.57
CIITAP33076 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC18.62■□□□□ 0.57
CIITAP33076 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC18.62■□□□□ 0.57
CIITAP33076 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CIITAP33076 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
CIITAP33076 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC18.62■□□□□ 0.57
CIITAP33076 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CIITAP33076 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC18.62■□□□□ 0.57
CIITAP33076 LINC00628-201ENST00000628516 1289 ntBASIC18.62■□□□□ 0.57
CIITAP33076 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 59.1 ms